protocols::simple_filters::PackStatFilter Class Reference

#include <PackStatFilter.hh>

Public Types
typedef protocols::filters::Filter	Super
typedef protocols::filters::Filter	Filter
typedef protocols::filters::FilterOP	FilterOP
typedef core::Real	Real
typedef core::pose::Pose	Pose
typedef utility::tag::TagCOP	TagCOP
typedef protocols::filters::Filters_map	Filters_map
typedef basic::datacache::DataMap	DataMap
typedef protocols::moves::Movers_map	Movers_map

Public Member Functions
	PackStatFilter ()
	default constructor More...
	PackStatFilter (Real const &ss)
	constructor with arguments More...
	PackStatFilter (PackStatFilter const &rval)
	copy constructor More...
virtual	~PackStatFilter ()
virtual filters::FilterOP	clone () const
	make clone More...
virtual filters::FilterOP	fresh_instance () const
	make fresh instance More...
void	filtered_score (Real const &ss)
	set filtered secondary structure More...
virtual std::string	name () const
	get name of this filter More...
virtual void	parse_my_tag (TagCOP tag, basic::datacache::DataMap &, filters::Filters_map const &, Movers_map const &, Pose const &)
	parse xml More...
virtual bool	apply (Pose const &pose) const
	returns true if the given pose passes the filter, false otherwise. In this case, the test is whether the give pose is the topology we want. More...
virtual Real	report_sm (Pose const &pose) const
	used to report filter internals through a score or silent file More...
Real	compute (Pose const &pose) const
	calc packstat score More...
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual void	report (std::ostream &, core::pose::Pose const &) const
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

Public Attributes
core::Size	chain_
	determine which chain to evaluate, 0 is all More...
core::Size	repeats_
	how many times to repeat evaluation More...

Private Attributes
Real	filtered_score_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef basic::datacache::DataMap protocols::simple_filters::PackStatFilter::DataMap

typedef protocols::filters::Filter protocols::simple_filters::PackStatFilter::Filter

typedef protocols::filters::FilterOP protocols::simple_filters::PackStatFilter::FilterOP

typedef protocols::filters::Filters_map protocols::simple_filters::PackStatFilter::Filters_map

typedef protocols::moves::Movers_map protocols::simple_filters::PackStatFilter::Movers_map

typedef core::pose::Pose protocols::simple_filters::PackStatFilter::Pose

typedef core::Real protocols::simple_filters::PackStatFilter::Real

typedef protocols::filters::Filter protocols::simple_filters::PackStatFilter::Super

typedef utility::tag::TagCOP protocols::simple_filters::PackStatFilter::TagCOP

Constructor & Destructor Documentation

protocols::simple_filters::PackStatFilter::PackStatFilter

(

)

default constructor

Referenced by clone(), and fresh_instance().

protocols::simple_filters::PackStatFilter::PackStatFilter

(

Real const &

ss

)

constructor with arguments

protocols::simple_filters::PackStatFilter::PackStatFilter

(

PackStatFilter const &

rval

)

copy constructor

virtual protocols::simple_filters::PackStatFilter::~PackStatFilter ( )

inlinevirtual

Member Function Documentation

bool protocols::simple_filters::PackStatFilter::apply ( Pose const &  pose ) const

virtual

returns true if the given pose passes the filter, false otherwise. In this case, the test is whether the give pose is the topology we want.

Implements protocols::filters::Filter.

References compute(), filtered_score_, protocols::filters::Filter::score(), and protocols::simple_filters::tr.

virtual filters::FilterOP protocols::simple_filters::PackStatFilter::clone ( ) const

inlinevirtual

make clone

Implements protocols::filters::Filter.

References PackStatFilter().

PackStatFilter::Real protocols::simple_filters::PackStatFilter::compute

(

Pose const &

pose

)

const

calc packstat score

References chain_, core::scoring::packstat::compute_packing_score(), repeats_, single_chain, core::pose::Pose::split_by_chain(), and protocols::simple_filters::tr.

Referenced by apply(), and report_sm().

void protocols::simple_filters::PackStatFilter::filtered_score

(

Real const &

ss

)

set filtered secondary structure

References filtered_score_, and protocols::filters::Filter::score().

virtual filters::FilterOP protocols::simple_filters::PackStatFilter::fresh_instance ( ) const

inlinevirtual

make fresh instance

Implements protocols::filters::Filter.

References PackStatFilter().

virtual std::string protocols::simple_filters::PackStatFilter::name ( ) const

inlinevirtual

get name of this filter

Reimplemented from protocols::filters::Filter.

void protocols::simple_filters::PackStatFilter::parse_my_tag ( TagCOP  tag, basic::datacache::DataMap &  , filters::Filters_map const &  , Movers_map const &  , Pose const &    )

virtual

parse xml

Reimplemented from protocols::filters::Filter.

References chain_, filtered_score_, repeats_, and protocols::simple_filters::tr.

PackStatFilter::Real protocols::simple_filters::PackStatFilter::report_sm ( Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

core::Size protocols::simple_filters::PackStatFilter::chain_

determine which chain to evaluate, 0 is all

Referenced by compute(), and parse_my_tag().

Real protocols::simple_filters::PackStatFilter::filtered_score_

private

Referenced by apply(), filtered_score(), and parse_my_tag().

core::Size protocols::simple_filters::PackStatFilter::repeats_

how many times to repeat evaluation

Referenced by compute(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• src/protocols/simple_filters/PackStatFilter.hh
• src/protocols/simple_filters/PackStatFilter.cc