Rosetta Protocols  2014.35
Public Types | Public Member Functions | Private Attributes | List of all members
protocols::simple_filters::TaskAwareSASAFilter Class Reference

#include <TaskAwareSASAFilter.hh>

Public Types

typedef protocols::filters::Filter Super
 
typedef protocols::filters::Filter Filter
 
typedef
protocols::filters::FilterOP 
FilterOP
 
typedef core::Real Real
 
typedef core::pose::Pose Pose
 
typedef utility::tag::TagCOP TagCOP
 
typedef
protocols::filters::Filters_map 
Filters_map
 
typedef basic::datacache::DataMap DataMap
 
typedef
protocols::moves::Movers_map 
Movers_map
 

Public Member Functions

 TaskAwareSASAFilter ()
 
 TaskAwareSASAFilter (core::pack::task::TaskFactoryOP task_factory, core::Real const t, bool const d, bool const s, core::Real const r, core::Size const j)
 
 TaskAwareSASAFilter (TaskAwareSASAFilter const &rval)
 
virtual ~TaskAwareSASAFilter ()
 
virtual
protocols::filters::FilterOP 
clone () const
 
virtual
protocols::filters::FilterOP 
fresh_instance () const
 
virtual std::string name () const
 
void task_factory (core::pack::task::TaskFactoryOP task_factory)
 
void threshold (core::Real const t)
 
void designable_only (bool const d)
 
void sc_only (bool const s)
 
void probe_radius (core::Real const r)
 
void jump_id (core::Size const j)
 
core::pack::task::TaskFactoryOP task_factory () const
 
core::Real threshold () const
 
bool designable_only () const
 
bool sc_only () const
 
core::Real probe_radius () const
 
core::Size jump_id () const
 
virtual void parse_my_tag (TagCOP tag, basic::datacache::DataMap &, protocols::filters::Filters_map const &, Movers_map const &, Pose const &)
 parse xml More...
 
virtual bool apply (core::pose::Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
 
virtual core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
virtual void report (std::ostream &out, core::pose::Pose const &pose) const
 
core::Real compute (core::pose::Pose const &pose, bool const verbose) const
 calc oligomeric AverageDegree More...
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 

Private Attributes

core::pack::task::TaskFactoryOP task_factory_
 
core::Real threshold_
 
bool designable_only_
 
bool sc_only_
 
core::Real probe_radius_
 
core::Size jump_id_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::simple_filters::TaskAwareSASAFilter::TaskAwareSASAFilter ( )

Referenced by clone(), and fresh_instance().

protocols::simple_filters::TaskAwareSASAFilter::TaskAwareSASAFilter ( core::pack::task::TaskFactoryOP  task_factory,
core::Real const  t,
bool const  d,
bool const  s,
core::Real const  r,
core::Size const  j 
)
protocols::simple_filters::TaskAwareSASAFilter::TaskAwareSASAFilter ( TaskAwareSASAFilter const &  rval)
protocols::simple_filters::TaskAwareSASAFilter::~TaskAwareSASAFilter ( )
virtual

Member Function Documentation

bool protocols::simple_filters::TaskAwareSASAFilter::apply ( core::pose::Pose const &  pose) const
virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), and threshold().

protocols::filters::FilterOP protocols::simple_filters::TaskAwareSASAFilter::clone ( ) const
virtual
core::Real protocols::simple_filters::TaskAwareSASAFilter::compute ( core::pose::Pose const &  pose,
bool const  verbose 
) const
void protocols::simple_filters::TaskAwareSASAFilter::designable_only ( bool const  d)

References designable_only_.

bool protocols::simple_filters::TaskAwareSASAFilter::designable_only ( ) const

References designable_only_.

Referenced by compute(), and parse_my_tag().

protocols::filters::FilterOP protocols::simple_filters::TaskAwareSASAFilter::fresh_instance ( ) const
virtual
void protocols::simple_filters::TaskAwareSASAFilter::jump_id ( core::Size const  j)

References jump_id_.

core::Size protocols::simple_filters::TaskAwareSASAFilter::jump_id ( ) const

References jump_id_.

Referenced by compute(), and parse_my_tag().

virtual std::string protocols::simple_filters::TaskAwareSASAFilter::name ( ) const
inlinevirtual

Reimplemented from protocols::filters::Filter.

void protocols::simple_filters::TaskAwareSASAFilter::parse_my_tag ( TagCOP  tag,
basic::datacache::DataMap data,
protocols::filters::Filters_map const &  ,
Movers_map const &  ,
Pose const &   
)
virtual
void protocols::simple_filters::TaskAwareSASAFilter::probe_radius ( core::Real const  r)

References probe_radius_.

core::Real protocols::simple_filters::TaskAwareSASAFilter::probe_radius ( ) const

References probe_radius_.

Referenced by compute(), and parse_my_tag().

void protocols::simple_filters::TaskAwareSASAFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
virtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::simple_filters::TaskAwareSASAFilter::report_sm ( core::pose::Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

void protocols::simple_filters::TaskAwareSASAFilter::sc_only ( bool const  s)

References sc_only_.

bool protocols::simple_filters::TaskAwareSASAFilter::sc_only ( ) const

References sc_only_.

Referenced by compute(), and parse_my_tag().

void protocols::simple_filters::TaskAwareSASAFilter::task_factory ( core::pack::task::TaskFactoryOP  task_factory)

References task_factory(), and task_factory_.

core::pack::task::TaskFactoryOP protocols::simple_filters::TaskAwareSASAFilter::task_factory ( ) const

References task_factory_.

Referenced by compute(), parse_my_tag(), and task_factory().

void protocols::simple_filters::TaskAwareSASAFilter::threshold ( core::Real const  t)

References threshold_.

core::Real protocols::simple_filters::TaskAwareSASAFilter::threshold ( ) const

References threshold_.

Referenced by apply(), and parse_my_tag().

Member Data Documentation

bool protocols::simple_filters::TaskAwareSASAFilter::designable_only_
private

Referenced by designable_only().

core::Size protocols::simple_filters::TaskAwareSASAFilter::jump_id_
private

Referenced by jump_id().

core::Real protocols::simple_filters::TaskAwareSASAFilter::probe_radius_
private

Referenced by probe_radius().

bool protocols::simple_filters::TaskAwareSASAFilter::sc_only_
private

Referenced by sc_only().

core::pack::task::TaskFactoryOP protocols::simple_filters::TaskAwareSASAFilter::task_factory_
private

Referenced by task_factory().

core::Real protocols::simple_filters::TaskAwareSASAFilter::threshold_
private

Referenced by threshold().


The documentation for this class was generated from the following files: