protocols::protein_interface_design::filters::IRmsdFilter Class Reference

#include <IRmsdFilter.hh>

Public Member Functions
	IRmsdFilter ()
	IRmsdFilter (protocols::docking::DockJumps const movable_jumps, core::Real const threshold, core::pose::PoseOP reference_pose)
bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...
protocols::filters::FilterOP	clone () const
protocols::filters::FilterOP	fresh_instance () const
void	report (std::ostream &out, core::pose::Pose const &pose) const
core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...
core::Real	compute (core::pose::Pose const &pose) const
virtual	~IRmsdFilter ()
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data_map, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &reference_pose)
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
virtual std::string	name () const

Private Attributes
core::Real	threshold_
core::pose::PoseOP	reference_pose_
protocols::docking::DockJumps	movable_jumps_
core::scoring::ScoreFunctionOP	scorefxn_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::IRmsdFilter::IRmsdFilter

(

)

References filters.

Referenced by clone(), and fresh_instance().

protocols::protein_interface_design::filters::IRmsdFilter::IRmsdFilter	(	protocols::docking::DockJumps const	movable_jumps,
		core::Real const	threshold,
		core::pose::PoseOP	reference_pose
	)

References filters.

protocols::protein_interface_design::filters::IRmsdFilter::~IRmsdFilter ( )

virtual

Member Function Documentation

bool protocols::protein_interface_design::filters::IRmsdFilter::apply ( core::pose::Pose const &  pose ) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), rmsd, threshold_, and protocols::protein_interface_design::filters::TR.

protocols::filters::FilterOP protocols::protein_interface_design::filters::IRmsdFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

References IRmsdFilter().

core::Real protocols::protein_interface_design::filters::IRmsdFilter::compute

(

core::pose::Pose const &

pose

)

const

References protocols::docking::calc_Irmsd(), movable_jumps_, reference_pose_, and scorefxn_.

Referenced by apply(), report(), and report_sm().

protocols::filters::FilterOP protocols::protein_interface_design::filters::IRmsdFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References IRmsdFilter().

void protocols::protein_interface_design::filters::IRmsdFilter::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  data_map, protocols::filters::Filters_map const &  , protocols::moves::Movers_map const &  , core::pose::Pose const &  reference_pose  )

virtual

Reimplemented from protocols::filters::Filter.

References core::scoring::ScoreFunction::clone(), protocols::rosetta_scripts::get_score_function_name(), movable_jumps_, basic::options::OptionKeys::in::file::native, basic::options::option, protocols::rosetta_scripts::parse_score_function(), core::import_pose::pose_from_pdb(), reference_pose_, protocols::rosetta_scripts::saved_reference_pose(), scorefxn_, threshold_, protocols::protein_interface_design::filters::TR, and user.

void protocols::protein_interface_design::filters::IRmsdFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

virtual

Reimplemented from protocols::filters::Filter.

References compute(), and rmsd.

core::Real protocols::protein_interface_design::filters::IRmsdFilter::report_sm ( core::pose::Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute(), and rmsd.

Member Data Documentation

protocols::docking::DockJumps protocols::protein_interface_design::filters::IRmsdFilter::movable_jumps_

private

Referenced by compute(), and parse_my_tag().

core::pose::PoseOP protocols::protein_interface_design::filters::IRmsdFilter::reference_pose_

private

Referenced by compute(), and parse_my_tag().

core::scoring::ScoreFunctionOP protocols::protein_interface_design::filters::IRmsdFilter::scorefxn_

private

Referenced by compute(), and parse_my_tag().

core::Real protocols::protein_interface_design::filters::IRmsdFilter::threshold_

private

Referenced by apply(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• src/protocols/protein_interface_design/filters/IRmsdFilter.hh
• src/protocols/protein_interface_design/filters/IRmsdFilter.cc