protocols::environment::claims::CutBiasClaim Class Reference

#include <CutBiasClaim.hh>

Public Member Functions
	CutBiasClaim (ClaimingMoverOP owner, utility::tag::TagCOP tag, basic::datacache::DataMap const &)
	CutBiasClaim (ClaimingMoverOP owner, std::string const &label, core::fragment::SecondaryStructure const &ss)
	CutBiasClaim (ClaimingMoverOP owner, std::string const &label, std::map< LocalPosition, core::Real > const &biases)
	CutBiasClaim (ClaimingMoverOP owner, std::string const &label, std::pair< core::Size, core::Size > const &range, core::Real bias)
virtual void	yield_elements (FoldTreeSketch const &fts, CutBiasElements &elements) const
	build ResidueElements that indicate the introduction of a new peptide edge into the fold tree. More...
EnvClaimOP	clone () const
virtual std::string	type () const
virtual void	show (std::ostream &os) const
Public Member Functions inherited from protocols::environment::claims::EnvClaim
virtual	~EnvClaim ()
	Virtual destructor. More...
	EnvClaim (ClaimingMoverOP)
ClaimingMoverOP	owner () const
	A clone used by the EnvClaimFactory to instantiate new EnvClaims using an XML tag. More...
void	set_owner (ClaimingMoverOP owner)
void	annotate (core::pose::Pose const &, core::environment::SequenceAnnotationOP) const
	allow the claim to use any internally queued ResidueSelectors to create sequence annotations. More...
virtual void	yield_elements (core::pose::Pose const &, DOFElements &) const
	build and export DOFElements, which represent control over non-jump dofs (torsions, bond lengths, angles) final conformation. More...

Private Types
typedef EnvClaim	Parent
typedef core::environment::FoldTreeSketch	FoldTreeSketch
typedef core::environment::LocalPosition	LocalPosition

Private Attributes
std::string	label_
std::map< LocalPosition, core::Real >	biases_

Additional Inherited Members
Static Public Member Functions inherited from protocols::environment::claims::EnvClaim
static EnvClaimOP	make_claim (std::string const &name, ClaimingMoverOP owner, utility::tag::TagCOP tag, basic::datacache::DataMap &datamap)
	factory method for claims. More...
static bool	is_claim (std::string const &name)
Protected Member Functions inherited from protocols::environment::claims::EnvClaim
virtual DOFElement	wrap_dof_id (core::id::DOF_ID const &id) const
ControlStrength	parse_ctrl_str (std::string const &str) const
void	queue_for_annotation (std::string const &label, ResidueSelectorCOP selector)

Member Typedef Documentation

typedef core::environment::FoldTreeSketch protocols::environment::claims::CutBiasClaim::FoldTreeSketch

private

typedef core::environment::LocalPosition protocols::environment::claims::CutBiasClaim::LocalPosition

private

typedef EnvClaim protocols::environment::claims::CutBiasClaim::Parent

private

Constructor & Destructor Documentation

protocols::environment::claims::CutBiasClaim::CutBiasClaim	(	ClaimingMoverOP	owner,
		utility::tag::TagCOP	tag,
		basic::datacache::DataMap const &	datamap
	)

References biases_, basic::datacache::DataMap::get(), basic::datacache::DataMap::has(), label_, protocols::environment::claims::EnvClaim::queue_for_annotation(), and protocols::sic_dock::range().

Referenced by clone().

protocols::environment::claims::CutBiasClaim::CutBiasClaim	(	ClaimingMoverOP	owner,
		std::string const &	label,
		core::fragment::SecondaryStructure const &	ss
	)

References biases_, label_, core::fragment::SecondaryStructure::loop_fraction(), and core::fragment::SecondaryStructure::total_residue().

protocols::environment::claims::CutBiasClaim::CutBiasClaim	(	ClaimingMoverOP	owner,
		std::string const &	label,
		std::map< LocalPosition, core::Real > const &	biases
	)

protocols::environment::claims::CutBiasClaim::CutBiasClaim	(	ClaimingMoverOP	owner,
		std::string const &	label,
		std::pair< core::Size, core::Size > const &	range,
		core::Real	bias
	)

References biases_, and label_.

Member Function Documentation

EnvClaimOP protocols::environment::claims::CutBiasClaim::clone ( ) const

virtual

Implements protocols::environment::claims::EnvClaim.

References CutBiasClaim().

void protocols::environment::claims::CutBiasClaim::show ( std::ostream &  os ) const

virtual

Reimplemented from protocols::environment::claims::EnvClaim.

References protocols::environment::claims::EnvClaim::owner(), and type().

std::string protocols::environment::claims::CutBiasClaim::type ( ) const

virtual

Implements protocols::environment::claims::EnvClaim.

Referenced by show().

void protocols::environment::claims::CutBiasClaim::yield_elements ( FoldTreeSketch const &  , CutBiasElements &    ) const

virtual

build ResidueElements that indicate the introduction of a new peptide edge into the fold tree.

Reimplemented from protocols::environment::claims::EnvClaim.

References protocols::environment::claims::CutBiasElement::bias, biases_, and protocols::environment::claims::CutBiasElement::p.

Member Data Documentation

std::map< LocalPosition, core::Real > protocols::environment::claims::CutBiasClaim::biases_

private

Referenced by CutBiasClaim(), and yield_elements().

std::string protocols::environment::claims::CutBiasClaim::label_

private

Referenced by CutBiasClaim().

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The documentation for this class was generated from the following files:

• src/protocols/environment/claims/CutBiasClaim.hh
• src/protocols/environment/claims/CutBiasClaim.cc