Rosetta Protocols  2014.35
Public Member Functions | Private Types | Private Attributes | List of all members
protocols::environment::claims::CutBiasClaim Class Reference

#include <CutBiasClaim.hh>

Public Member Functions

 CutBiasClaim (ClaimingMoverOP owner, utility::tag::TagCOP tag, basic::datacache::DataMap const &)
 
 CutBiasClaim (ClaimingMoverOP owner, std::string const &label, core::fragment::SecondaryStructure const &ss)
 
 CutBiasClaim (ClaimingMoverOP owner, std::string const &label, std::map< LocalPosition, core::Real > const &biases)
 
 CutBiasClaim (ClaimingMoverOP owner, std::string const &label, std::pair< core::Size, core::Size > const &range, core::Real bias)
 
virtual void yield_elements (FoldTreeSketch const &fts, CutBiasElements &elements) const
 build ResidueElements that indicate the introduction of a new peptide edge into the fold tree. More...
 
EnvClaimOP clone () const
 
virtual std::string type () const
 
virtual void show (std::ostream &os) const
 
- Public Member Functions inherited from protocols::environment::claims::EnvClaim
virtual ~EnvClaim ()
 Virtual destructor. More...
 
 EnvClaim (ClaimingMoverOP)
 
ClaimingMoverOP owner () const
 A clone used by the EnvClaimFactory to instantiate new EnvClaims using an XML tag. More...
 
void set_owner (ClaimingMoverOP owner)
 
void annotate (core::pose::Pose const &, core::environment::SequenceAnnotationOP) const
 allow the claim to use any internally queued ResidueSelectors to create sequence annotations. More...
 
virtual void yield_elements (core::pose::Pose const &, DOFElements &) const
 build and export DOFElements, which represent control over non-jump dofs (torsions, bond lengths, angles) final conformation. More...
 

Private Types

typedef EnvClaim Parent
 
typedef
core::environment::FoldTreeSketch 
FoldTreeSketch
 
typedef
core::environment::LocalPosition 
LocalPosition
 

Private Attributes

std::string label_
 
std::map< LocalPosition,
core::Real
biases_
 

Additional Inherited Members

- Static Public Member Functions inherited from protocols::environment::claims::EnvClaim
static EnvClaimOP make_claim (std::string const &name, ClaimingMoverOP owner, utility::tag::TagCOP tag, basic::datacache::DataMap &datamap)
 factory method for claims. More...
 
static bool is_claim (std::string const &name)
 
- Protected Member Functions inherited from protocols::environment::claims::EnvClaim
virtual DOFElement wrap_dof_id (core::id::DOF_ID const &id) const
 
ControlStrength parse_ctrl_str (std::string const &str) const
 
void queue_for_annotation (std::string const &label, ResidueSelectorCOP selector)
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::environment::claims::CutBiasClaim::CutBiasClaim ( ClaimingMoverOP  owner,
utility::tag::TagCOP  tag,
basic::datacache::DataMap const &  datamap 
)
protocols::environment::claims::CutBiasClaim::CutBiasClaim ( ClaimingMoverOP  owner,
std::string const &  label,
core::fragment::SecondaryStructure const &  ss 
)
protocols::environment::claims::CutBiasClaim::CutBiasClaim ( ClaimingMoverOP  owner,
std::string const &  label,
std::map< LocalPosition, core::Real > const &  biases 
)
protocols::environment::claims::CutBiasClaim::CutBiasClaim ( ClaimingMoverOP  owner,
std::string const &  label,
std::pair< core::Size, core::Size > const &  range,
core::Real  bias 
)

References biases_, and label_.

Member Function Documentation

EnvClaimOP protocols::environment::claims::CutBiasClaim::clone ( ) const
virtual
void protocols::environment::claims::CutBiasClaim::show ( std::ostream &  os) const
virtual
std::string protocols::environment::claims::CutBiasClaim::type ( ) const
virtual
void protocols::environment::claims::CutBiasClaim::yield_elements ( FoldTreeSketch const &  ,
CutBiasElements  
) const
virtual

build ResidueElements that indicate the introduction of a new peptide edge into the fold tree.

Reimplemented from protocols::environment::claims::EnvClaim.

References protocols::environment::claims::CutBiasElement::bias, biases_, and protocols::environment::claims::CutBiasElement::p.

Member Data Documentation

std::map< LocalPosition, core::Real > protocols::environment::claims::CutBiasClaim::biases_
private

Referenced by CutBiasClaim(), and yield_elements().

std::string protocols::environment::claims::CutBiasClaim::label_
private

Referenced by CutBiasClaim().


The documentation for this class was generated from the following files: