Rosetta Protocols  2014.35
Public Member Functions | Private Attributes | List of all members
protocols::simple_filters::BuriedUnsatHbondFilter Class Reference

filters based on an upper bound # of buried unsatisfied polar residues More...

#include <BuriedUnsatHbondFilter.hh>

Public Member Functions

 BuriedUnsatHbondFilter ()
 
 BuriedUnsatHbondFilter (core::Size const upper_threshold, core::Size const jump_num)
 
bool apply (core::pose::Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
 
void report (std::ostream &out, core::pose::Pose const &pose) const
 
core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
core::Real compute (core::pose::Pose const &pose) const
 
filters::FilterOP clone () const
 
filters::FilterOP fresh_instance () const
 
virtual ~BuriedUnsatHbondFilter ()
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 
void task_factory (core::pack::task::TaskFactoryOP tf)
 
core::pack::task::TaskFactoryOP task_factory () const
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 
virtual std::string name () const
 

Private Attributes

core::scoring::ScoreFunctionCOP sfxn_
 
core::Size upper_threshold_
 
core::Size jump_num_
 
core::pack::task::TaskFactoryOP task_factory_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Detailed Description

filters based on an upper bound # of buried unsatisfied polar residues

Constructor & Destructor Documentation

protocols::simple_filters::BuriedUnsatHbondFilter::BuriedUnsatHbondFilter ( )

References filters.

Referenced by clone(), and fresh_instance().

protocols::simple_filters::BuriedUnsatHbondFilter::BuriedUnsatHbondFilter ( core::Size const  upper_threshold,
core::Size const  jump_num 
)
protocols::simple_filters::BuriedUnsatHbondFilter::~BuriedUnsatHbondFilter ( )
virtual

Member Function Documentation

bool protocols::simple_filters::BuriedUnsatHbondFilter::apply ( core::pose::Pose const &  pose) const
virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References protocols::simple_filters::buried_unsat_hbond_filter_tracer, and compute().

filters::FilterOP protocols::simple_filters::BuriedUnsatHbondFilter::clone ( ) const
virtual
core::Real protocols::simple_filters::BuriedUnsatHbondFilter::compute ( core::pose::Pose const &  pose) const
filters::FilterOP protocols::simple_filters::BuriedUnsatHbondFilter::fresh_instance ( ) const
virtual
void protocols::simple_filters::BuriedUnsatHbondFilter::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap datamap,
filters::Filters_map const &  ,
protocols::moves::Movers_map const &  ,
core::pose::Pose const &   
)
virtual

Reimplemented from protocols::filters::Filter.

References core::scoring::TR.

void protocols::simple_filters::BuriedUnsatHbondFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
virtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::simple_filters::BuriedUnsatHbondFilter::report_sm ( core::pose::Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

void protocols::simple_filters::BuriedUnsatHbondFilter::task_factory ( core::pack::task::TaskFactoryOP  tf)

References task_factory_.

core::pack::task::TaskFactoryOP protocols::simple_filters::BuriedUnsatHbondFilter::task_factory ( ) const

References task_factory_.

Referenced by compute().

Member Data Documentation

core::Size protocols::simple_filters::BuriedUnsatHbondFilter::jump_num_
private

Referenced by compute().

core::scoring::ScoreFunctionCOP protocols::simple_filters::BuriedUnsatHbondFilter::sfxn_
private
core::pack::task::TaskFactoryOP protocols::simple_filters::BuriedUnsatHbondFilter::task_factory_
private

Referenced by compute(), and task_factory().

core::Size protocols::simple_filters::BuriedUnsatHbondFilter::upper_threshold_
private

The documentation for this class was generated from the following files: