add_build_set(BuildSet const &build_set) | protocols::match::upstream::ProteinUpstreamBuilder | |
atom_coordinate_unacceptable(Size build_set_id, core::conformation::Residue const &rescoords, Size atomno) const | protocols::match::upstream::ProteinUpstreamBuilder | private |
avoid_building_any_rotamers_dueto_native_ | protocols::match::upstream::ProteinUpstreamBuilder | private |
bbgrid() const | protocols::match::upstream::UpstreamBuilder | inlineprotected |
build(ScaffoldBuildPoint const &build_point) const | protocols::match::upstream::ProteinUpstreamBuilder | virtual |
build_set(core::chemical::ResidueTypeCOP restype) const | protocols::match::upstream::ProteinUpstreamBuilder | |
build_set(core::chemical::ResidueTypeCOP restype) | protocols::match::upstream::ProteinUpstreamBuilder | |
build_sets_ | protocols::match::upstream::ProteinUpstreamBuilder | private |
clone() const | protocols::match::upstream::ProteinUpstreamBuilder | virtual |
compatible(Hit const &my_hit, ScaffoldBuildPoint const &build_point_mine, UpstreamBuilder const &other, Hit const &other_hit, ScaffoldBuildPoint const &build_point_other, bool first_dispatch=true) const | protocols::match::upstream::ProteinUpstreamBuilder | virtual |
compatible(Hit const &my_hit, ScaffoldBuildPoint const &build_point_mine, ProteinUpstreamBuilder const &other, Hit const &other_hit, ScaffoldBuildPoint const &build_point_other, bool first_dispatch=true) const | protocols::match::upstream::ProteinUpstreamBuilder | virtual |
compute_cb_frame(Size build_set_id, ProteinBackboneBuildPoint const &build_point) const | protocols::match::upstream::ProteinUpstreamBuilder | private |
DunbrackRotamerSampleData typedef | protocols::match::upstream::ProteinUpstreamBuilder | |
DunbrackRotamerSampleDataVector typedef | protocols::match::upstream::ProteinUpstreamBuilder | |
HTReal typedef | protocols::match::upstream::ProteinUpstreamBuilder | |
initialize_rescoords(Size build_set_id, core::conformation::Residue &rescoords, ScaffoldBuildPoint const &build_point) const | protocols::match::upstream::ProteinUpstreamBuilder | private |
n_build_sets() const | protocols::match::upstream::ProteinUpstreamBuilder | inline |
n_restypes_to_build() const | protocols::match::upstream::ProteinUpstreamBuilder | virtual |
ProteinUpstreamBuilder() | protocols::match::upstream::ProteinUpstreamBuilder | |
Real typedef | protocols::match::upstream::ProteinUpstreamBuilder | |
recover_hit(Hit const &hit, ScaffoldBuildPoint const &build_point, UpstreamResidueProcessor &processor) const | protocols::match::upstream::ProteinUpstreamBuilder | virtual |
recover_hits(std::list< Hit >::const_iterator hits_begin, std::list< Hit >::const_iterator hits_end, ScaffoldBuildPoint const &build_point, UpstreamResidueProcessor &processor) const | protocols::match::upstream::ProteinUpstreamBuilder | virtual |
restype(Size which_restype) const | protocols::match::upstream::ProteinUpstreamBuilder | virtual |
sampler_ | protocols::match::upstream::ProteinUpstreamBuilder | private |
set_bb_grid(BumpGridCOP bbgrid) | protocols::match::upstream::UpstreamBuilder | |
set_native_flag(bool native) | protocols::match::upstream::ProteinUpstreamBuilder | |
set_sampler(ProteinSCSamplerCOP sampler) | protocols::match::upstream::ProteinUpstreamBuilder | |
set_use_input_sidechain(bool setting) | protocols::match::upstream::ProteinUpstreamBuilder | |
Size typedef | protocols::match::upstream::UpstreamBuilder | |
use_input_sc_ | protocols::match::upstream::ProteinUpstreamBuilder | private |
Vector typedef | protocols::match::upstream::ProteinUpstreamBuilder | |
~ProteinUpstreamBuilder() | protocols::match::upstream::ProteinUpstreamBuilder | virtual |
~UpstreamBuilder() | protocols::match::upstream::UpstreamBuilder | virtual |