protocols::farna::BasePairStepSequence Class Reference

#include <BasePairStepLibrary.hh>

Public Member Functions
	BasePairStepSequence (char const nt_i, char const nt_i_next, char const nt_j, char const nt_j_next)
	BasePairStepSequence (std::string const &sequence, Size const i, Size const i_next, Size const j, Size const j_next)
	BasePairStepSequence (std::string const &sequence, BasePairStep const &base_pair_step)
	~BasePairStepSequence ()

Private Types
typedef std::pair< char, char >	DinucleotideStrandSequence

Private Attributes
std::pair < DinucleotideStrandSequence, DinucleotideStrandSequence >	base_pair_step_sequence_

Friends
bool	operator< (BasePairStepSequence const &lhs, BasePairStepSequence const &rhs)
std::ostream &	operator<< (std::ostream &os, BasePairStepSequence const &bps)

Member Typedef Documentation

typedef std::pair< char, char > protocols::farna::BasePairStepSequence::DinucleotideStrandSequence

private

Constructor & Destructor Documentation

protocols::farna::BasePairStepSequence::BasePairStepSequence	(	char const	nt_i,
		char const	nt_i_next,
		char const	nt_j,
		char const	nt_j_next
	)

References base_pair_step_sequence_.

protocols::farna::BasePairStepSequence::BasePairStepSequence	(	std::string const &	sequence,
		Size const	i,
		Size const	i_next,
		Size const	j,
		Size const	j_next
	)

References base_pair_step_sequence_.

protocols::farna::BasePairStepSequence::BasePairStepSequence	(	std::string const &	sequence,
		BasePairStep const &	base_pair_step
	)

References base_pair_step_sequence_, protocols::farna::BasePairStep::i(), protocols::farna::BasePairStep::i_next(), protocols::farna::BasePairStep::j(), and protocols::farna::BasePairStep::j_next().

protocols::farna::BasePairStepSequence::~BasePairStepSequence ( )

inline

Friends And Related Function Documentation

bool operator< ( BasePairStepSequence const &  lhs, BasePairStepSequence const &  rhs  )

friend

std::ostream& operator<< ( std::ostream &  os, BasePairStepSequence const &  bps  )

friend

Member Data Documentation

std::pair< DinucleotideStrandSequence, DinucleotideStrandSequence > protocols::farna::BasePairStepSequence::base_pair_step_sequence_

private

Referenced by BasePairStepSequence().

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The documentation for this class was generated from the following files:

• src/protocols/farna/BasePairStepLibrary.hh
• src/protocols/farna/BasePairStepLibrary.cc