Rosetta Protocols: protocols::sic_dock::LinkerScore Class Reference

Rosetta Protocols 2014.35

#include <RigidScore.hh>

Public Member Functions
	LinkerScore (Pose const &pose1, Pose const &pose2, Size max_loop_len, Size lookup_radius, std::string const &outtag)

virtual	~LinkerScore ()

core::Real	score (Xforms const &x1, Xforms const &x2) const

bool	dump_linkers (Xform const &x1, Xform const &x2, std::string const &out_perfix) const

std::string	type () const

Public Member Functions inherited from protocols::sic_dock::RigidScore
virtual	~RigidScore ()

virtual void	show (std::ostream &out, int width=10) const

virtual void	show (std::ostream &out, Xforms const &x1, Xforms const &x2, int width=10) const

Private Attributes
Sizes const	loopsizes_

core::Size	lookup_radius_

Pose const &	pose1_

Pose const	pose2_

TermInfo	lowers1_

TermInfo	uppers1_

TermInfo	lowers2_

TermInfo	uppers2_

Real	max_dis2_

std::string	outtag_

Static Private Attributes
static protocols::loophash::LoopHashLibraryOP	loop_hash_library_ = NULL

Additional Inherited Members
Protected Types inherited from protocols::sic_dock::RigidScore
typedef core::Real	Real

typedef core::Size	Size

typedef core::pose::Pose	Pose

typedef numeric::xyzVector< Real >	Vec

typedef numeric::xyzMatrix< Real >	Mat

typedef utility::vector1< Vec >	Vecs

typedef utility::vector1< Real >	Reals

typedef utility::vector1< Size >	Sizes

typedef numeric::Xforms	Xforms

typedef utility::vector1 < RigidScoreCOP >	Scores

Constructor & Destructor Documentation

protocols::sic_dock::LinkerScore::LinkerScore	(	Pose const &	pose1,
		Pose const &	pose2,
		Size	max_loop_len,
		Size	lookup_radius,
		std::string const &	outtag
	)

References basic::options::OptionKeys::lh::db_path, protocols::sic_dock::get_termini_from_pose(), protocols::loophash::LoopHashLibrary::load_mergeddb(), loop_hash_library_, loopsizes_, lowers1_, lowers2_, basic::options::option, pose1_, pose2_, protocols::sic_dock::TR, uppers1_, uppers2_, user, and utility_exit_with_message.

virtual protocols::sic_dock::LinkerScore::~LinkerScore ( )

inlinevirtual

Member Function Documentation

bool protocols::sic_dock::LinkerScore::dump_linkers	(	Xform const &	x1,
		Xform const &	x2,
		std::string const &	out_perfix
	)		const

References protocols::sic_dock::dump_loophash_linkers(), lookup_radius_, loop_hash_library_, loopsizes_, lowers1_, lowers2_, uppers1_, uppers2_, and protocols::sic_dock::vec3_to_stub().

core::Real protocols::sic_dock::LinkerScore::score	(	Xforms const &	x1,
		Xforms const &	x2
	)		const

virtual

Implements protocols::sic_dock::RigidScore.

References protocols::sic_dock::count_linkers(), protocols::sic_dock::linker_count2score(), lookup_radius_, loop_hash_library_, loopsizes_, lowers1_, lowers2_, s, uppers1_, uppers2_, and protocols::sic_dock::vec3_to_stub().

std::string protocols::sic_dock::LinkerScore::type ( ) const

inlinevirtual

Implements protocols::sic_dock::RigidScore.

Member Data Documentation

core::Size protocols::sic_dock::LinkerScore::lookup_radius_

private

Referenced by dump_linkers(), and score().

protocols::loophash::LoopHashLibraryOP protocols::sic_dock::LinkerScore::loop_hash_library_ = NULL

staticprivate

Referenced by dump_linkers(), LinkerScore(), and score().

Sizes const protocols::sic_dock::LinkerScore::loopsizes_

private

Referenced by dump_linkers(), LinkerScore(), and score().

TermInfo protocols::sic_dock::LinkerScore::lowers1_

private

Referenced by dump_linkers(), LinkerScore(), and score().

TermInfo protocols::sic_dock::LinkerScore::lowers2_

private

Referenced by dump_linkers(), LinkerScore(), and score().

Real protocols::sic_dock::LinkerScore::max_dis2_

private

std::string protocols::sic_dock::LinkerScore::outtag_

private

Pose const& protocols::sic_dock::LinkerScore::pose1_

private

Referenced by LinkerScore().

Pose const protocols::sic_dock::LinkerScore::pose2_

private

Referenced by LinkerScore().

TermInfo protocols::sic_dock::LinkerScore::uppers1_

private

Referenced by dump_linkers(), LinkerScore(), and score().

TermInfo protocols::sic_dock::LinkerScore::uppers2_

private

Referenced by dump_linkers(), LinkerScore(), and score().

The documentation for this class was generated from the following files:

src/protocols/sic_dock/RigidScore.hh
src/protocols/sic_dock/RigidScore.cc