protocols::pack_daemon::FASTER_IG_Repacker Class Reference

#include <PackDaemon.hh>

Public Types
typedef RotamerSubsetRepacker	parent
typedef core::pack::interaction_graph::FASTERInteractionGraphOP	FASTERInteractionGraphOP
Public Types inherited from protocols::pack_daemon::RotamerSubsetRepacker
typedef core::pack::rotamer_set::RotamerSubsetsOP	RotamerSubsetsOP
typedef QuickRepacker	parent
Public Types inherited from protocols::pack_daemon::QuickRepacker
typedef utility::pointer::ReferenceCount	parent
typedef PackDaemon::RotamerAssignmentAndEnergy	RotamerAssignmentAndEnergy
typedef core::pose::PoseOP	PoseOP
typedef core::pack::task::PackerTaskOP	PackerTaskOP
typedef core::pack::interaction_graph::FixedBBInteractionGraphOP	FixedBBInteractionGraphOP
typedef core::pack::rotamer_set::RotamerSetsOP	RotamerSetsOP

Public Member Functions
	FASTER_IG_Repacker (PoseOP pose, PackerTaskOP task, FixedBBInteractionGraphOP ig, RotamerSetsOP rotsets)
virtual	~FASTER_IG_Repacker ()
virtual RotamerAssignmentAndEnergy	repack (utility::vector0< int > const &rot_to_pack)
FASTERInteractionGraphOP	create_faster_ig_from_rot_to_pack (utility::vector0< int > const &rot_to_pack, RotamerSubsetsOP rot_subsets)
void	set_num_sa (int setting)
void	set_sa_scale (core::Real setting)
void	set_ciBR_only (bool setting)
Public Member Functions inherited from protocols::pack_daemon::RotamerSubsetRepacker
	RotamerSubsetRepacker (PoseOP pose, PackerTaskOP task, FixedBBInteractionGraphOP ig, RotamerSetsOP rot_sets)
	~RotamerSubsetRepacker ()
RotamerSubsetsOP	create_rotamer_subsets_from_rot_to_pack (utility::vector0< int > const &rot_to_pack)
Public Member Functions inherited from protocols::pack_daemon::QuickRepacker
	QuickRepacker (PoseOP pose, PackerTaskOP task, FixedBBInteractionGraphOP ig, RotamerSetsOP rot_sets)
virtual	~QuickRepacker ()

Private Attributes
int	num_sa_
core::Real	sa_scale_
bool	ciBR_only_

Additional Inherited Members
Protected Member Functions inherited from protocols::pack_daemon::QuickRepacker
PoseOP	pose ()
	Read access to derived classes. More...
PackerTaskOP	task ()
FixedBBInteractionGraphOP	ig ()
RotamerSetsOP	rot_sets ()
void	task (PackerTaskOP)

Member Typedef Documentation

typedef core::pack::interaction_graph::FASTERInteractionGraphOP protocols::pack_daemon::FASTER_IG_Repacker::FASTERInteractionGraphOP

typedef RotamerSubsetRepacker protocols::pack_daemon::FASTER_IG_Repacker::parent

Constructor & Destructor Documentation

protocols::pack_daemon::FASTER_IG_Repacker::FASTER_IG_Repacker	(	PoseOP	pose,
		PackerTaskOP	task,
		FixedBBInteractionGraphOP	ig,
		RotamerSetsOP	rotsets
	)

References protocols::pack_daemon::QuickRepacker::ig().

protocols::pack_daemon::FASTER_IG_Repacker::~FASTER_IG_Repacker ( )

virtual

Member Function Documentation

FASTER_IG_Repacker::FASTERInteractionGraphOP protocols::pack_daemon::FASTER_IG_Repacker::create_faster_ig_from_rot_to_pack	(	utility::vector0< int > const &	rot_to_pack,
		RotamerSubsetsOP	rot_subsets
	)

References protocols::pack_daemon::QuickRepacker::ig(), core::pack::rotamer_set::RotamerSets::nmoltenres(), protocols::pack_daemon::QuickRepacker::rot_sets(), core::pack::rotamer_set::RotamerSets::rotid_on_moltenresidue(), and protocols::pack_daemon::TR.

Referenced by repack().

FASTER_IG_Repacker::RotamerAssignmentAndEnergy protocols::pack_daemon::FASTER_IG_Repacker::repack ( utility::vector0< int > const &  rot_to_pack )

virtual

Implements protocols::pack_daemon::QuickRepacker.

References ciBR_only_, create_faster_ig_from_rot_to_pack(), protocols::pack_daemon::RotamerSubsetRepacker::create_rotamer_subsets_from_rot_to_pack(), core::pack::rotamer_set::RotamerSets::nmoltenres(), num_sa_, protocols::pack_daemon::QuickRepacker::pose(), protocols::pack_daemon::QuickRepacker::rot_sets(), core::pack::annealer::FASTERAnnealer::run(), sa_scale_, core::pack::annealer::FASTERAnnealer::set_ciBR_only(), core::pack::annealer::FASTERAnnealer::set_num_sa_trajectories(), and core::pack::annealer::FASTERAnnealer::set_sa_length_scale().

void protocols::pack_daemon::FASTER_IG_Repacker::set_ciBR_only

(

bool

setting

)

References ciBR_only_.

void protocols::pack_daemon::FASTER_IG_Repacker::set_num_sa

(

int

setting

)

References num_sa_.

void protocols::pack_daemon::FASTER_IG_Repacker::set_sa_scale

(

core::Real

setting

)

References sa_scale_.

Member Data Documentation

bool protocols::pack_daemon::FASTER_IG_Repacker::ciBR_only_

private

Referenced by repack(), and set_ciBR_only().

int protocols::pack_daemon::FASTER_IG_Repacker::num_sa_

private

Referenced by repack(), and set_num_sa().

core::Real protocols::pack_daemon::FASTER_IG_Repacker::sa_scale_

private

Referenced by repack(), and set_sa_scale().

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The documentation for this class was generated from the following files:

• src/protocols/pack_daemon/PackDaemon.hh
• src/protocols/pack_daemon/PackDaemon.cc