Rosetta Protocols  2014.35
protocols::branch_angle::BranchAngleOptimizer Member List

This is the complete list of members for protocols::branch_angle::BranchAngleOptimizer, including all inherited members.

bond_angle_residue_type_param_set()protocols::branch_angle::BranchAngleOptimizer
bond_angle_residue_type_param_set() const protocols::branch_angle::BranchAngleOptimizer
bond_angle_residue_type_param_set(core::scoring::mm::MMBondAngleResidueTypeParamSetOP param_set)protocols::branch_angle::BranchAngleOptimizer
bond_angle_residue_type_param_set(core::scoring::mm::MMBondAngleResidueTypeParamSetCOP param_set)protocols::branch_angle::BranchAngleOptimizer
bond_angle_residue_type_param_set_protocols::branch_angle::BranchAngleOptimizerprivate
BranchAngleOptimizer(core::scoring::mm::MMBondAngleLibrary const &mm_bondangle_library)protocols::branch_angle::BranchAngleOptimizer
BranchAngleOptimizer()protocols::branch_angle::BranchAngleOptimizer
BranchAngleOptimizer(BranchAngleOptimizer const &src)protocols::branch_angle::BranchAngleOptimizer
coef1_protocols::branch_angle::BranchAngleOptimizerprivate
coef2_protocols::branch_angle::BranchAngleOptimizerprivate
coef_map1_protocols::branch_angle::BranchAngleOptimizerprivate
coef_map2_protocols::branch_angle::BranchAngleOptimizerprivate
initialized() const protocols::branch_angle::BranchAngleOptimizerinline
initialized_protocols::branch_angle::BranchAngleOptimizerprivate
mm_bondangle_library_protocols::branch_angle::BranchAngleOptimizerprivate
num_coef1() const protocols::branch_angle::BranchAngleOptimizer
num_coef2() const protocols::branch_angle::BranchAngleOptimizer
num_undefined_coef1() const protocols::branch_angle::BranchAngleOptimizer
num_undefined_coef2() const protocols::branch_angle::BranchAngleOptimizer
operator=(BranchAngleOptimizer const &src)protocols::branch_angle::BranchAngleOptimizerprivate
optimize_angles(core::pose::Pose &pose, core::id::AtomID main_atomid1, core::id::AtomID center_atomid, core::id::AtomID main_atomid2, bool optimize_for_minimum=false)protocols::branch_angle::BranchAngleOptimizer
overall_params(core::pose::Pose const &pose, core::id::AtomID main_atomid1, core::id::AtomID center_atomid, core::id::AtomID main_atomid2, core::Real &Ktheta, core::Real &theta0, core::Real &energy0)protocols::branch_angle::BranchAngleOptimizer
param1(core::pose::Pose const &pose, core::id::AtomID const &main_atomid1, core::id::AtomID const &center_atomid, core::id::AtomID const &main_atomid2, core::id::AtomID const &branch_atomid1) const protocols::branch_angle::BranchAngleOptimizer
param2(core::pose::Pose const &pose, core::id::AtomID const &main_atomid1, core::id::AtomID const &center_atomid, core::id::AtomID const &main_atomid2, core::id::AtomID const &branch_atomid1, core::id::AtomID const &branch_atomid2) const protocols::branch_angle::BranchAngleOptimizer
read_coef1(std::istream &in)protocols::branch_angle::BranchAngleOptimizer
read_coef1(std::string const &filename)protocols::branch_angle::BranchAngleOptimizer
read_coef1_default()protocols::branch_angle::BranchAngleOptimizer
read_coef1_user()protocols::branch_angle::BranchAngleOptimizer
read_coef2(std::istream &in)protocols::branch_angle::BranchAngleOptimizer
read_coef2(std::string const &filename)protocols::branch_angle::BranchAngleOptimizer
read_coef2_default()protocols::branch_angle::BranchAngleOptimizer
read_coef2_user()protocols::branch_angle::BranchAngleOptimizer
read_database()protocols::branch_angle::BranchAngleOptimizer
read_undefined_coef1(std::istream &in)protocols::branch_angle::BranchAngleOptimizer
read_undefined_coef1(std::string const &filename)protocols::branch_angle::BranchAngleOptimizer
read_undefined_coef1()protocols::branch_angle::BranchAngleOptimizer
read_undefined_coef2(std::istream &in)protocols::branch_angle::BranchAngleOptimizer
read_undefined_coef2(std::string const &filename)protocols::branch_angle::BranchAngleOptimizer
read_undefined_coef2()protocols::branch_angle::BranchAngleOptimizer
tolerance() const protocols::branch_angle::BranchAngleOptimizerinline
tolerance(core::Real tolerance)protocols::branch_angle::BranchAngleOptimizerinline
tolerance_protocols::branch_angle::BranchAngleOptimizerprivate
undefined_coef1_protocols::branch_angle::BranchAngleOptimizerprivate
undefined_coef2_protocols::branch_angle::BranchAngleOptimizerprivate
write_database() const protocols::branch_angle::BranchAngleOptimizer
write_undefined_coef1(std::ostream &out) const protocols::branch_angle::BranchAngleOptimizer
write_undefined_coef1(std::string const &filename) const protocols::branch_angle::BranchAngleOptimizer
write_undefined_coef1() const protocols::branch_angle::BranchAngleOptimizer
write_undefined_coef2(std::ostream &out) const protocols::branch_angle::BranchAngleOptimizer
write_undefined_coef2(std::string const &filename) const protocols::branch_angle::BranchAngleOptimizer
write_undefined_coef2() const protocols::branch_angle::BranchAngleOptimizer
~BranchAngleOptimizer()protocols::branch_angle::BranchAngleOptimizervirtual