protocols::enzdes::SetCatalyticResPackBehavior Class Reference

queries the pose cst cache for the catalytic residues, and sets the behavior for them as specified in the cstfile More...

#include <EnzdesTaskOperations.hh>

Public Types
typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP
typedef core::pose::Pose	Pose
typedef core::pack::task::PackerTask	PackerTask

Public Member Functions
	SetCatalyticResPackBehavior ()
	~SetCatalyticResPackBehavior ()
virtual TaskOperationOP	clone () const
virtual void	apply (Pose const &pose, PackerTask &task) const
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
virtual void	parse_tag (TagCOP tag, DataMap &)
void	set_fix_catalytic_aa (bool setting)

Private Attributes
bool	fix_catalytic_aa_
std::string	behavior_non_catalytic_

Detailed Description

queries the pose cst cache for the catalytic residues, and sets the behavior for them as specified in the cstfile

Member Typedef Documentation

typedef core::pack::task::PackerTask protocols::enzdes::SetCatalyticResPackBehavior::PackerTask

typedef core::pose::Pose protocols::enzdes::SetCatalyticResPackBehavior::Pose

typedef core::pack::task::operation::TaskOperationOP protocols::enzdes::SetCatalyticResPackBehavior::TaskOperationOP

Constructor & Destructor Documentation

protocols::enzdes::SetCatalyticResPackBehavior::SetCatalyticResPackBehavior

(

)

References enzdes, fix_catalytic_aa, option, and options.

Referenced by clone().

protocols::enzdes::SetCatalyticResPackBehavior::~SetCatalyticResPackBehavior

(

)

Member Function Documentation

void protocols::enzdes::SetCatalyticResPackBehavior::apply ( Pose const &  pose, PackerTask &  task  ) const

virtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements core::pack::task::operation::TaskOperation.

References core::chemical::aa_from_name(), behavior_non_catalytic_, core::pack::task::create_command_map(), basic::options::OptionKeys::enzdes::ex_catalytic_rot, fix_catalytic_aa_, protocols::toolbox::match_enzdes_util::get_enzdes_observer(), core::chemical::ResidueType::is_protein(), core::chemical::ResidueType::nchi(), core::pack::task::PackerTask::nonconst_residue_task(), core::chemical::num_canonical_aas, basic::options::option, core::pack::task::ResidueLevelTask::or_ex1(), core::pack::task::ResidueLevelTask::or_ex1_sample_level(), core::pack::task::ResidueLevelTask::or_ex2(), core::pack::task::ResidueLevelTask::or_ex2_sample_level(), core::pack::task::ResidueLevelTask::or_ex3(), core::pack::task::ResidueLevelTask::or_ex3_sample_level(), core::pack::task::ResidueLevelTask::or_ex4(), core::pack::task::ResidueLevelTask::or_ex4_sample_level(), core::pack::task::ResidueLevelTask::prevent_repacking(), core::pose::Pose::residue_type(), core::pack::task::ResidueLevelTask::restrict_absent_canonical_aas(), core::pack::task::ResidueLevelTask::restrict_to_repacking(), utility::to_string(), core::pose::Pose::total_residue(), protocols::enzdes::tr, and user.

core::pack::task::operation::TaskOperationOP protocols::enzdes::SetCatalyticResPackBehavior::clone ( ) const

virtual

Implements core::pack::task::operation::TaskOperation.

References behavior_non_catalytic_, fix_catalytic_aa_, and SetCatalyticResPackBehavior().

void protocols::enzdes::SetCatalyticResPackBehavior::parse_tag ( TagCOP  tag, DataMap &    )

virtual

References behavior_non_catalytic_, and fix_catalytic_aa_.

void protocols::enzdes::SetCatalyticResPackBehavior::set_fix_catalytic_aa ( bool  setting )

inline

References fix_catalytic_aa_.

Member Data Documentation

std::string protocols::enzdes::SetCatalyticResPackBehavior::behavior_non_catalytic_

private

Referenced by apply(), clone(), and parse_tag().

bool protocols::enzdes::SetCatalyticResPackBehavior::fix_catalytic_aa_

private

Referenced by apply(), clone(), parse_tag(), and set_fix_catalytic_aa().

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The documentation for this class was generated from the following files:

• src/protocols/enzdes/EnzdesTaskOperations.hh
• src/protocols/enzdes/EnzdesTaskOperations.cc