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Rosetta Protocols
2014.35
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#include <GeometryFilter.hh>
Public Member Functions | |
GeometryFilter () | |
bool | apply (core::pose::Pose const &pose) const |
Returns true if the given pose passes the filter, false otherwise. More... | |
void | report (std::ostream &out, core::pose::Pose const &pose) const |
core::Real | report_sm (core::pose::Pose const &pose) const |
used to report filter internals through a score or silent file More... | |
core::Real | compute (core::pose::Pose const &pose) const |
filters::FilterOP | clone () const |
filters::FilterOP | fresh_instance () const |
virtual | ~GeometryFilter () |
void | parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &) |
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Filter () | |
Filter (std::string const &) | |
Filter (Filter const &) | |
virtual | ~Filter () |
virtual std::string | get_type () const |
std::string | get_user_defined_name () const |
void | set_user_defined_name (std::string const &name) |
virtual void | clear () |
used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More... | |
virtual void | apply (core::io::serialization::PipeMap &pmap) |
virtual void | score (core::io::serialization::PipeMap &pmap) |
virtual core::Real | score (core::pose::Pose &pose) |
virtual void | parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks) |
virtual std::string | name () const |
Private Attributes | |
core::Real | omega_cutoff_ |
core::Real | cart_bonded_cutoff_ |
std::string | filename_ |
core::Real | cst_cutoff_ |
core::Size | start_ |
core::Size | end_ |
Additional Inherited Members | |
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std::string | scorename_ |
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inline |
References filters.
Referenced by clone(), and fresh_instance().
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virtual |
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virtual |
Returns true if the given pose passes the filter, false otherwise.
Implements protocols::filters::Filter.
References compute(), and protocols::simple_filters::TR.
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inlinevirtual |
Implements protocols::filters::Filter.
References GeometryFilter().
core::Real protocols::simple_filters::GeometryFilter::compute | ( | core::pose::Pose const & | pose | ) | const |
References protocols::simple_moves::ConstraintSetMover::apply(), core::scoring::atom_pair_constraint, atom_pair_constraint, cart_bonded, cart_bonded_cutoff_, protocols::simple_moves::ConstraintSetMover::constraint_file(), cst_cutoff_, end_, extract_asymmetric_unit(), filename_, core::scoring::get_score_function(), is_symmetric(), omega, omega_cutoff_, protocols::filters::Filter::score(), start_, protocols::simple_filters::TR, core::pose::Pose::update_residue_neighbors(), and weight.
Referenced by apply(), report(), and report_sm().
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inlinevirtual |
Implements protocols::filters::Filter.
References GeometryFilter().
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virtual |
Reimplemented from protocols::filters::Filter.
References cart_bonded_cutoff_, cst_cutoff_, end_, filename_, omega_cutoff_, and start_.
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virtual |
Reimplemented from protocols::filters::Filter.
References compute().
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virtual |
used to report filter internals through a score or silent file
Reimplemented from protocols::filters::Filter.
References compute().
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private |
Referenced by compute(), and parse_my_tag().
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private |
Referenced by compute(), and parse_my_tag().
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private |
Referenced by compute(), and parse_my_tag().
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private |
Referenced by compute(), and parse_my_tag().
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private |
Referenced by compute(), and parse_my_tag().
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private |
Referenced by compute(), and parse_my_tag().