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Rosetta Protocols
2014.35
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Rosetta Protocols
2014.35
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holds particular score components, weights and calculates the total score for a fragment candidate More...
#include <PValuedFragmentScoreManager.hh>
Public Member Functions | |
| PValuedFragmentScoreManager () | |
| creates an empty manager More... | |
| bool | score_fragment_from_cache (FragmentCandidateOP, FragmentScoreMapOP) |
| calculates all the small scores for a given fragment More... | |
| bool | score_fragment (FragmentCandidateOP, FragmentScoreMapOP) |
| calculates all the small scores for a given fragment More... | |
| void | describe_fragments (utility::vector1< std::pair< FragmentCandidateOP, scores::FragmentScoreMapOP > > const &, std::ostream &) |
| prints a flat table with all scores for all the fragments in a given vector More... | |
 Public Member Functions inherited from protocols::frag_picker::scores::FragmentScoreManager | |
| virtual | ~FragmentScoreManager () |
| Automatically generated virtual destructor for class deriving directly from ReferenceCount. More... | |
| FragmentScoreManager () | |
| creates an empty manager More... | |
| FragmentScoreMapOP | create_empty_map () |
| creates an empty score map More... | |
| void | add_scoring_method (FragmentScoringMethodOP, Real) |
| registers a new scoring method in this manager More... | |
| Size | count_components () |
| says how many scoring methods have already been registered More... | |
| FragmentScoringMethodOP | get_component (Size index) |
| Returns a desired scoring method. More... | |
| utility::vector1< Real > | get_weights () |
| returns a vector of weights that are used to compute the total score More... | |
| void | show_scoring_methods (std::ostream &out) |
| prints a nice table showing the registered scores More... | |
| Real | total_score (FragmentScoreMapOP) |
| calculates the total score More... | |
| void | use_late_scoring_for_zeros (const bool if_true) |
| those score metohods that have weight = 0.0 will be computed after the fragments are picked More... | |
| bool | if_late_scoring_for_zeros () |
| says if late scoring is used or not More... | |
| bool | score_zero_scores (FragmentCandidateOP, FragmentScoreMapOP) |
| calculates all these small scores for a given fragment whose weight is 0.0 More... | |
| void | register_score_maker (MakeFragmentScoringMethodOP) |
| registers a maker object that will be used to create a scoring method object More... | |
| void | create_scoring_method (std::string const &, Size, Real, Real, bool, FragmentPickerOP, std::string) |
| creates a new scoring method object More... | |
| void | create_scores (std::string const &, FragmentPickerOP) |
| reads a config file and creates scoring methods More... | |
| void | do_caching (VallChunkOP chunk) |
| calls do_caching() for each FragmentScoringMethod object, if it is possible More... | |
| void | clean_up () |
| calls clean_up() for each FragmentScoringMethod object, if it is possible More... | |
| void | set_width (FragmentScoringMethodOP which_score, Size width) |
| sets up a new number of characters spend to print fragment score value More... | |
| void | set_precision (FragmentScoringMethodOP which_score, Size precision) |
| sets up a new precision used to print fragment score value More... | |
Private Attributes | |
| utility::vector1 < utility::vector1 < AdaptiveScoreHistogramOP > > | statistics_ |
Additional Inherited Members | |
| Public Attributes inherited from protocols::frag_picker::scores::FragmentScoreManager | |
| Size | default_width_ |
| default width used to print a score value, equal to 6 More... | |
| Size | default_precision_ |
| default precision used to print a score value, equal to 1 More... | |
| Static Public Attributes inherited from protocols::frag_picker::scores::FragmentScoreManager | |
| static const Size | TOTAL_PRECISION = 3 |
| precision used to display the total score for each fragment More... | |
| Protected Attributes inherited from protocols::frag_picker::scores::FragmentScoreManager | |
| utility::vector1 < FragmentScoringMethodOP > | scores_ |
| std::map < FragmentScoringMethodOP, Size > | width_ |
| std::map < FragmentScoringMethodOP, Size > | precision_ |
holds particular score components, weights and calculates the total score for a fragment candidate
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inline |
creates an empty manager
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virtual |
prints a flat table with all scores for all the fragments in a given vector
print the scores and associated p-values
Reimplemented from protocols::frag_picker::scores::FragmentScoreManager.
References F, I, length, protocols::frag_picker::scores::FragmentScoreManager::precision_, sc, protocols::frag_picker::scores::FragmentScoreManager::scores_, statistics_, protocols::frag_picker::scores::FragmentScoreManager::TOTAL_PRECISION, protocols::frag_picker::scores::FragmentScoreManager::total_score(), w(), and protocols::frag_picker::scores::FragmentScoreManager::width_.
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virtual |
calculates all the small scores for a given fragment
results are properly stored inside a FragmentScoreMap object
Reimplemented from protocols::frag_picker::scores::FragmentScoreManager.
References l, protocols::frag_picker::scores::FragmentScoreManager::score_fragment(), protocols::frag_picker::scores::FragmentScoreManager::scores_, and statistics_.
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virtual |
calculates all the small scores for a given fragment
results are properly stored inside a FragmentScoreMap object
Reimplemented from protocols::frag_picker::scores::FragmentScoreManager.
References l, protocols::frag_picker::scores::FragmentScoreManager::score_fragment_from_cache(), protocols::frag_picker::scores::FragmentScoreManager::scores_, and statistics_.
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private |
Referenced by describe_fragments(), score_fragment(), and score_fragment_from_cache().
1.8.7