protocols::loop_modeling::utilities Namespace Reference

Generally useful loop-sampling meta-algorithms. More...

Classes
class	AcceptanceCheck
	Apply an additional Monte Carlo acceptance check. More...
class	LoopFilter
	Apply any filter in the context of a loop modeling simulation. More...
class	LoopMoverGroup
	Manage a collection of loop-sampling algorithms. More...
class	PeriodicMover
	Apply another mover at regular intervals. More...
class	RepeatedMover
	Apply another mover multiple times. More...

Typedefs
typedef utility::pointer::owning_ptr < AcceptanceCheck >	AcceptanceCheckOP
typedef utility::pointer::owning_ptr < AcceptanceCheck const >	AcceptanceCheckCOP
typedef utility::pointer::owning_ptr < LoopFilter >	LoopFilterOP
typedef utility::pointer::owning_ptr < LoopFilter const >	LoopFilterCOP
typedef utility::pointer::owning_ptr < LoopMoverGroup >	LoopMoverGroupOP
typedef utility::pointer::owning_ptr < LoopMoverGroup const >	LoopMoverGroupCOP
typedef utility::pointer::owning_ptr < PeriodicMover >	PeriodicMoverOP
typedef utility::pointer::owning_ptr < PeriodicMover const >	PeriodicMoverCOP
typedef utility::pointer::owning_ptr < RepeatedMover >	RepeatedMoverOP
typedef utility::pointer::owning_ptr < RepeatedMover const >	RepeatedMoverCOP

Functions
LoopMoverOP	loop_mover_from_tag (TagCOP tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)
LoopMoverOP	loop_mover_from_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data, protocols::filters::Filters_map const &filters, protocols::moves::Movers_map const &movers, core::pose::Pose const &pose)

Detailed Description

Generally useful loop-sampling meta-algorithms.

This namespace contains generally useful LoopMover subclasses that don't directly perform loop sampling. For example, the PeriodicMover and RepeatedMover classes just control how often a given loop mover is called. The LoopMoverGroup classes makes it easy to work with a collection of loop movers.

Typedef Documentation

typedef utility::pointer::owning_ptr<AcceptanceCheck const> protocols::loop_modeling::utilities::AcceptanceCheckCOP

typedef utility::pointer::owning_ptr<AcceptanceCheck> protocols::loop_modeling::utilities::AcceptanceCheckOP

typedef utility::pointer::owning_ptr<LoopFilter const> protocols::loop_modeling::utilities::LoopFilterCOP

typedef utility::pointer::owning_ptr<LoopFilter> protocols::loop_modeling::utilities::LoopFilterOP

typedef utility::pointer::owning_ptr<LoopMoverGroup const> protocols::loop_modeling::utilities::LoopMoverGroupCOP

typedef utility::pointer::owning_ptr<LoopMoverGroup> protocols::loop_modeling::utilities::LoopMoverGroupOP

typedef utility::pointer::owning_ptr<PeriodicMover const> protocols::loop_modeling::utilities::PeriodicMoverCOP

typedef utility::pointer::owning_ptr<PeriodicMover> protocols::loop_modeling::utilities::PeriodicMoverOP

typedef utility::pointer::owning_ptr<RepeatedMover const> protocols::loop_modeling::utilities::RepeatedMoverCOP

typedef utility::pointer::owning_ptr<RepeatedMover> protocols::loop_modeling::utilities::RepeatedMoverOP

Function Documentation

LoopMoverOP protocols::loop_modeling::utilities::loop_mover_from_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	data,
		protocols::filters::Filters_map const &	filters,
		protocols::moves::Movers_map const &	movers,
		core::pose::Pose const &	pose
	)

LoopMoverOP protocols::loop_modeling::utilities::loop_mover_from_tag	(	TagCOP	tag,
		DataMap &	data,
		Filters_map const &	filters,
		Movers_map const &	movers,
		Pose const &	pose
	)

References utility::pointer::owning_ptr< T >::get(), and loop_mover.

Referenced by protocols::loop_modeling::LoopModeler::parse_my_tag(), and protocols::loop_modeling::LoopProtocol::parse_my_tag().