Rosetta Protocols  2014.35
Namespaces
LoopRelaxMover.cc File Reference
#include <protocols/comparative_modeling/LoopRelaxMover.hh>
#include <protocols/comparative_modeling/LoopRelaxMoverCreator.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/loops/LoopsFileIO.hh>
#include <core/chemical/VariantType.hh>
#include <boost/foreach.hpp>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/task/operation/NoRepackDisulfides.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <core/pose/selection.hh>
#include <utility/tag/Tag.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/fragment/FragSet.hh>
#include <core/id/AtomID.hh>
#include <core/io/pdb/pose_io.hh>
#include <core/io/silent/silent.fwd.hh>
#include <core/io/raw_data/DisulfideFile.hh>
#include <core/kinematics/Jump.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/scoring/constraints/BoundConstraint.hh>
#include <core/scoring/constraints/util.hh>
#include <core/scoring/electron_density/util.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/rms_util.hh>
#include <core/types.hh>
#include <basic/Tracer.hh>
#include <protocols/checkpoint/CheckPointer.hh>
#include <protocols/comparative_modeling/util.hh>
#include <protocols/evaluation/PoseEvaluator.hh>
#include <protocols/simple_filters/RmsdEvaluator.hh>
#include <protocols/evaluation/EvaluatorFactory.hh>
#include <protocols/idealize/IdealizeMover.hh>
#include <protocols/loops/loops_definers/util.hh>
#include <protocols/loops/loop_mover/IndependentLoopMover.hh>
#include <protocols/loops/loop_mover/refine/LoopMover_CCD.hh>
#include <protocols/loops/LoopMoverFactory.hh>
#include <protocols/loops/loop_mover/refine/LoopMover_KIC.hh>
#include <protocols/loops/loop_mover/perturb/LoopMover_QuickCCD.hh>
#include <protocols/loops/looprelax_protocols.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/loops/util.hh>
#include <protocols/moves/MoverStatus.hh>
#include <protocols/simple_moves/PackRotamersMover.hh>
#include <protocols/loop_modeling/types.hh>
#include <protocols/loop_modeling/LoopBuilder.hh>
#include <protocols/loop_modeling/LoopProtocol.hh>
#include <protocols/loop_modeling/samplers/LegacyKicSampler.hh>
#include <protocols/loop_modeling/refiners/MinimizationRefiner.hh>
#include <protocols/loop_modeling/refiners/RotamerTrialsRefiner.hh>
#include <protocols/loop_modeling/refiners/RepackingRefiner.hh>
#include <protocols/loop_modeling/utilities/RepeatedMover.hh>
#include <protocols/loop_modeling/utilities/PeriodicMover.hh>
#include <protocols/loop_modeling/loggers/Logger.hh>
#include <protocols/loop_modeling/loggers/ProgressBar.hh>
#include <protocols/loop_modeling/loggers/PdbLogger.hh>
#include <protocols/loop_modeling/loggers/ScoreVsRmsd.hh>
#include <protocols/kinematic_closure/KicMover.hh>
#include <protocols/kinematic_closure/perturbers/BondAnglePerturber.hh>
#include <protocols/kinematic_closure/perturbers/FragmentPerturber.hh>
#include <utility/exit.hh>
#include <core/pose/symmetry/util.hh>
#include <core/optimization/symmetry/SymAtomTreeMinimizer.hh>
#include <protocols/simple_moves/symmetry/SymPackRotamersMover.hh>
#include <core/conformation/symmetry/SymmetricConformation.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <string>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/loops.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/keys/relax.OptionKeys.gen.hh>
#include <basic/options/keys/cm.OptionKeys.gen.hh>
#include <basic/options/keys/edensity.OptionKeys.gen.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/util.tmpl.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <protocols/relax/FastRelax.hh>
#include <protocols/relax/MiniRelax.hh>
#include <protocols/relax/util.hh>
#include <utility/Bound.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <utility/keys/SmallKeyVector.hh>
#include <utility/options/BooleanOption.hh>
#include <basic/options/option.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::comparative_modeling