Rosetta Protocols  2014.35
Public Member Functions | Private Types | Private Member Functions | Private Attributes | List of all members
protocols::simple_filters::DeltaFilter Class Reference

#include <DeltaFilter.hh>

Public Member Functions

 DeltaFilter ()
 default ctor More...
 
virtual bool apply (core::pose::Pose const &pose) const
 Constructor with a single target residue. More...
 
virtual void report (std::ostream &out, core::pose::Pose const &pose) const
 
virtual core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
virtual
protocols::filters::FilterOP 
clone () const
 
virtual
protocols::filters::FilterOP 
fresh_instance () const
 
core::Real compute (core::pose::Pose const &pose) const
 
virtual ~DeltaFilter ()
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 
void ref_baseline (core::Real const rb)
 
core::Real baseline () const
 
void baseline (core::Real const b)
 
bool lower () const
 
void lower (bool const l)
 
bool upper () const
 
void upper (bool const u)
 
void filter (protocols::filters::FilterOP filter)
 
protocols::filters::FilterOP filter () const
 
core::Real range () const
 
void range (core::Real const r)
 
bool unbound () const
 
void unbound (bool const u)
 
bool relax_unbound () const
 
void relax_unbound (bool const u)
 
bool changing_baseline () const
 
void changing_baseline (bool const c)
 
core::Size jump () const
 
void jump (core::Size const j)
 
protocols::moves::MoverOP relax_mover () const
 
void relax_mover (protocols::moves::MoverOP const mover)
 
void scorefxn (core::scoring::ScoreFunctionOP s)
 
core::scoring::ScoreFunctionOP scorefxn () const
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 
virtual std::string name () const
 

Private Types

typedef protocols::filters::Filter parent
 

Private Member Functions

void unbind (core::pose::Pose &) const
 

Private Attributes

protocols::filters::FilterOP filter_
 
core::Real baseline_
 
core::Real range_
 
bool lower_
 
bool upper_
 
bool unbound_
 
bool relax_unbound_
 
bool changing_baseline_
 
core::Size jump_
 
protocols::moves::MoverOP relax_mover_
 
core::pose::PoseOP reference_pose_
 
core::Real ref_baseline_
 
core::scoring::ScoreFunctionOP scorefxn_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::simple_filters::DeltaFilter::DeltaFilter ( )

default ctor

Referenced by clone(), and fresh_instance().

protocols::simple_filters::DeltaFilter::~DeltaFilter ( )
virtual

Member Function Documentation

bool protocols::simple_filters::DeltaFilter::apply ( core::pose::Pose const &  pose) const
virtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

References compute(), lower(), range(), and upper().

core::Real protocols::simple_filters::DeltaFilter::baseline ( ) const
void protocols::simple_filters::DeltaFilter::baseline ( core::Real const  b)
bool protocols::simple_filters::DeltaFilter::changing_baseline ( ) const

References changing_baseline_.

Referenced by parse_my_tag().

void protocols::simple_filters::DeltaFilter::changing_baseline ( bool const  c)

References changing_baseline_.

protocols::filters::FilterOP protocols::simple_filters::DeltaFilter::clone ( ) const
virtual

Implements protocols::filters::Filter.

References DeltaFilter().

core::Real protocols::simple_filters::DeltaFilter::compute ( core::pose::Pose const &  pose) const
void protocols::simple_filters::DeltaFilter::filter ( protocols::filters::FilterOP  filter)

References filter(), and filter_.

protocols::filters::FilterOP protocols::simple_filters::DeltaFilter::filter ( ) const

References filter_.

Referenced by compute(), filter(), and parse_my_tag().

protocols::filters::FilterOP protocols::simple_filters::DeltaFilter::fresh_instance ( ) const
virtual

Implements protocols::filters::Filter.

References DeltaFilter().

core::Size protocols::simple_filters::DeltaFilter::jump ( ) const

References jump_.

Referenced by parse_my_tag(), and unbind().

void protocols::simple_filters::DeltaFilter::jump ( core::Size const  j)

References jump_.

bool protocols::simple_filters::DeltaFilter::lower ( ) const

References lower_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::DeltaFilter::lower ( bool const  l)

References lower_.

void protocols::simple_filters::DeltaFilter::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap data,
protocols::filters::Filters_map const &  filters,
protocols::moves::Movers_map const &  movers,
core::pose::Pose const &  pose 
)
virtual
core::Real protocols::simple_filters::DeltaFilter::range ( ) const

References range_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::DeltaFilter::range ( core::Real const  r)

References range_.

void protocols::simple_filters::DeltaFilter::ref_baseline ( core::Real const  rb)

References ref_baseline_.

protocols::moves::MoverOP protocols::simple_filters::DeltaFilter::relax_mover ( ) const

References relax_mover_.

Referenced by baseline(), parse_my_tag(), and unbind().

void protocols::simple_filters::DeltaFilter::relax_mover ( protocols::moves::MoverOP const  mover)

References relax_mover_.

bool protocols::simple_filters::DeltaFilter::relax_unbound ( ) const

References relax_unbound_.

Referenced by parse_my_tag(), and unbind().

void protocols::simple_filters::DeltaFilter::relax_unbound ( bool const  u)

References relax_unbound_.

void protocols::simple_filters::DeltaFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
virtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::simple_filters::DeltaFilter::report_sm ( core::pose::Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute(), and unbind().

Referenced by compute(), and parse_my_tag().

void protocols::simple_filters::DeltaFilter::scorefxn ( core::scoring::ScoreFunctionOP  s)

References scorefxn_.

core::scoring::ScoreFunctionOP protocols::simple_filters::DeltaFilter::scorefxn ( ) const

References scorefxn_.

Referenced by parse_my_tag().

void protocols::simple_filters::DeltaFilter::unbind ( core::pose::Pose pose) const
private
bool protocols::simple_filters::DeltaFilter::unbound ( ) const

References unbound_.

Referenced by parse_my_tag(), and unbind().

void protocols::simple_filters::DeltaFilter::unbound ( bool const  u)

References unbound_.

bool protocols::simple_filters::DeltaFilter::upper ( ) const

References upper_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::DeltaFilter::upper ( bool const  u)

References upper_.

Member Data Documentation

core::Real protocols::simple_filters::DeltaFilter::baseline_
private

Referenced by baseline().

bool protocols::simple_filters::DeltaFilter::changing_baseline_
private

Referenced by baseline(), and changing_baseline().

protocols::filters::FilterOP protocols::simple_filters::DeltaFilter::filter_
private

Referenced by baseline(), and filter().

core::Size protocols::simple_filters::DeltaFilter::jump_
private

Referenced by jump().

bool protocols::simple_filters::DeltaFilter::lower_
private

Referenced by lower().

core::Real protocols::simple_filters::DeltaFilter::range_
private

Referenced by range().

core::Real protocols::simple_filters::DeltaFilter::ref_baseline_
mutableprivate

Referenced by baseline(), and ref_baseline().

core::pose::PoseOP protocols::simple_filters::DeltaFilter::reference_pose_
private

Referenced by baseline(), and parse_my_tag().

protocols::moves::MoverOP protocols::simple_filters::DeltaFilter::relax_mover_
private

Referenced by relax_mover().

bool protocols::simple_filters::DeltaFilter::relax_unbound_
private

Referenced by relax_unbound().

core::scoring::ScoreFunctionOP protocols::simple_filters::DeltaFilter::scorefxn_
private

Referenced by scorefxn().

bool protocols::simple_filters::DeltaFilter::unbound_
private

Referenced by unbound().

bool protocols::simple_filters::DeltaFilter::upper_
private

Referenced by upper().


The documentation for this class was generated from the following files: