protocols::simple_filters::DeltaFilter Class Reference

#include <DeltaFilter.hh>

Public Member Functions
	DeltaFilter ()
	default ctor More...
virtual bool	apply (core::pose::Pose const &pose) const
	Constructor with a single target residue. More...
virtual void	report (std::ostream &out, core::pose::Pose const &pose) const
virtual core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...
virtual protocols::filters::FilterOP	clone () const
virtual protocols::filters::FilterOP	fresh_instance () const
core::Real	compute (core::pose::Pose const &pose) const
virtual	~DeltaFilter ()
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
void	ref_baseline (core::Real const rb)
core::Real	baseline () const
void	baseline (core::Real const b)
bool	lower () const
void	lower (bool const l)
bool	upper () const
void	upper (bool const u)
void	filter (protocols::filters::FilterOP filter)
protocols::filters::FilterOP	filter () const
core::Real	range () const
void	range (core::Real const r)
bool	unbound () const
void	unbound (bool const u)
bool	relax_unbound () const
void	relax_unbound (bool const u)
bool	changing_baseline () const
void	changing_baseline (bool const c)
core::Size	jump () const
void	jump (core::Size const j)
protocols::moves::MoverOP	relax_mover () const
void	relax_mover (protocols::moves::MoverOP const mover)
void	scorefxn (core::scoring::ScoreFunctionOP s)
core::scoring::ScoreFunctionOP	scorefxn () const
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
virtual std::string	name () const

Private Types
typedef protocols::filters::Filter	parent

Private Member Functions
void	unbind (core::pose::Pose &) const

Private Attributes
protocols::filters::FilterOP	filter_
core::Real	baseline_
core::Real	range_
bool	lower_
bool	upper_
bool	unbound_
bool	relax_unbound_
bool	changing_baseline_
core::Size	jump_
protocols::moves::MoverOP	relax_mover_
core::pose::PoseOP	reference_pose_
core::Real	ref_baseline_
core::scoring::ScoreFunctionOP	scorefxn_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef protocols::filters::Filter protocols::simple_filters::DeltaFilter::parent

private

Constructor & Destructor Documentation

protocols::simple_filters::DeltaFilter::DeltaFilter

(

)

default ctor

Referenced by clone(), and fresh_instance().

protocols::simple_filters::DeltaFilter::~DeltaFilter ( )

virtual

Member Function Documentation

bool protocols::simple_filters::DeltaFilter::apply ( core::pose::Pose const &  pose ) const

virtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

References compute(), lower(), range(), and upper().

core::Real protocols::simple_filters::DeltaFilter::baseline

(

)

const

References baseline_, changing_baseline_, filter_, ref_baseline_, reference_pose_, relax_mover(), protocols::filters::Filter::report_sm(), core::pose::Pose::total_residue(), protocols::simple_filters::TR, unbind(), and utility_exit_with_message.

Referenced by compute(), and parse_my_tag().

void protocols::simple_filters::DeltaFilter::baseline

(

core::Real const

b

)

References protocols::match::upstream::b, and baseline_.

bool protocols::simple_filters::DeltaFilter::changing_baseline

(

)

const

References changing_baseline_.

Referenced by parse_my_tag().

void protocols::simple_filters::DeltaFilter::changing_baseline

(

bool const

c

)

References changing_baseline_.

protocols::filters::FilterOP protocols::simple_filters::DeltaFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

References DeltaFilter().

core::Real protocols::simple_filters::DeltaFilter::compute

(

core::pose::Pose const &

pose

)

const

References baseline(), filter(), protocols::filters::Filter::get_user_defined_name(), report_sm(), protocols::simple_filters::TR, and unbind().

Referenced by apply(), report(), and report_sm().

void protocols::simple_filters::DeltaFilter::filter

(

protocols::filters::FilterOP

filter

)

References filter(), and filter_.

protocols::filters::FilterOP protocols::simple_filters::DeltaFilter::filter

(

)

const

References filter_.

Referenced by compute(), filter(), and parse_my_tag().

protocols::filters::FilterOP protocols::simple_filters::DeltaFilter::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

References DeltaFilter().

core::Size protocols::simple_filters::DeltaFilter::jump

(

)

const

References jump_.

Referenced by parse_my_tag(), and unbind().

void protocols::simple_filters::DeltaFilter::jump

(

core::Size const

j

)

References jump_.

bool protocols::simple_filters::DeltaFilter::lower

(

)

const

References lower_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::DeltaFilter::lower

(

bool const

l

)

References lower_.

void protocols::simple_filters::DeltaFilter::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  data, protocols::filters::Filters_map const &  filters, protocols::moves::Movers_map const &  movers, core::pose::Pose const &  pose  )

virtual

Reimplemented from protocols::filters::Filter.

References baseline(), changing_baseline(), filter(), jump(), lower(), protocols::rosetta_scripts::parse_filter(), protocols::rosetta_scripts::parse_mover(), protocols::rosetta_scripts::parse_score_function(), core::import_pose::pose_from_pdb(), range(), reference_pose_, relax_mover(), relax_unbound(), report_sm(), runtime_assert, protocols::rosetta_scripts::saved_reference_pose(), scorefxn(), protocols::simple_filters::TR, unbind(), unbound(), and upper().

core::Real protocols::simple_filters::DeltaFilter::range

(

)

const

References range_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::DeltaFilter::range

(

core::Real const

r

)

References range_.

void protocols::simple_filters::DeltaFilter::ref_baseline

(

core::Real const

rb

)

References ref_baseline_.

protocols::moves::MoverOP protocols::simple_filters::DeltaFilter::relax_mover

(

)

const

References relax_mover_.

Referenced by baseline(), parse_my_tag(), and unbind().

void protocols::simple_filters::DeltaFilter::relax_mover

(

protocols::moves::MoverOP const

mover

)

References relax_mover_.

bool protocols::simple_filters::DeltaFilter::relax_unbound

(

)

const

References relax_unbound_.

Referenced by parse_my_tag(), and unbind().

void protocols::simple_filters::DeltaFilter::relax_unbound

(

bool const

u

)

References relax_unbound_.

void protocols::simple_filters::DeltaFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

virtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::simple_filters::DeltaFilter::report_sm ( core::pose::Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute(), and unbind().

Referenced by compute(), and parse_my_tag().

void protocols::simple_filters::DeltaFilter::scorefxn

(

core::scoring::ScoreFunctionOP

s

)

References scorefxn_.

core::scoring::ScoreFunctionOP protocols::simple_filters::DeltaFilter::scorefxn

(

)

const

References scorefxn_.

Referenced by parse_my_tag().

void protocols::simple_filters::DeltaFilter::unbind ( core::pose::Pose &  pose ) const

private

References protocols::rigid::RigidBodyTransMover::apply(), jump(), relax_mover(), relax_unbound(), protocols::rigid::RigidBodyTransMover::step_size(), and unbound().

Referenced by baseline(), compute(), parse_my_tag(), and report_sm().

bool protocols::simple_filters::DeltaFilter::unbound

(

)

const

References unbound_.

Referenced by parse_my_tag(), and unbind().

void protocols::simple_filters::DeltaFilter::unbound

(

bool const

u

)

References unbound_.

bool protocols::simple_filters::DeltaFilter::upper

(

)

const

References upper_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::DeltaFilter::upper

(

bool const

u

)

References upper_.

Member Data Documentation

core::Real protocols::simple_filters::DeltaFilter::baseline_

private

Referenced by baseline().

bool protocols::simple_filters::DeltaFilter::changing_baseline_

private

Referenced by baseline(), and changing_baseline().

protocols::filters::FilterOP protocols::simple_filters::DeltaFilter::filter_

private

Referenced by baseline(), and filter().

core::Size protocols::simple_filters::DeltaFilter::jump_

private

Referenced by jump().

bool protocols::simple_filters::DeltaFilter::lower_

private

Referenced by lower().

core::Real protocols::simple_filters::DeltaFilter::range_

private

Referenced by range().

core::Real protocols::simple_filters::DeltaFilter::ref_baseline_

mutableprivate

Referenced by baseline(), and ref_baseline().

core::pose::PoseOP protocols::simple_filters::DeltaFilter::reference_pose_

private

Referenced by baseline(), and parse_my_tag().

protocols::moves::MoverOP protocols::simple_filters::DeltaFilter::relax_mover_

private

Referenced by relax_mover().

bool protocols::simple_filters::DeltaFilter::relax_unbound_

private

Referenced by relax_unbound().

core::scoring::ScoreFunctionOP protocols::simple_filters::DeltaFilter::scorefxn_

private

Referenced by scorefxn().

bool protocols::simple_filters::DeltaFilter::unbound_

private

Referenced by unbound().

bool protocols::simple_filters::DeltaFilter::upper_

private

Referenced by upper().

---

The documentation for this class was generated from the following files:

• src/protocols/simple_filters/DeltaFilter.hh
• src/protocols/simple_filters/DeltaFilter.cc