Rosetta Protocols  2014.35
protocols::loop_modeling::LoopProtocol Member List

This is the complete list of members for protocols::loop_modeling::LoopProtocol, including all inherited members.

add_acceptance_check(string name="loop_move")protocols::loop_modeling::LoopProtocol
add_filter(protocols::filters::FilterOP filter)protocols::loop_modeling::LoopProtocol
add_logger(loggers::LoggerOP logger)protocols::loop_modeling::LoopProtocol
add_mover(LoopMoverOP mover)protocols::loop_modeling::LoopProtocol
add_refiner(LoopMoverOP refiner)protocols::loop_modeling::LoopProtocol
apply(Pose &pose)protocols::loop_modeling::LoopMovervirtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
attempt_loop_move(Pose &pose, Size i, Size j, Size k)protocols::loop_modeling::LoopProtocolprivate
clear_info()protocols::moves::Moverinlinevirtual
clear_movers()protocols::loop_modeling::LoopProtocol
clear_movers_and_refiners()protocols::loop_modeling::LoopProtocol
clear_refiners()protocols::loop_modeling::LoopProtocol
clone() const protocols::moves::Movervirtual
create()protocols::moves::Movervirtual
deregister_nested_loop_movers()protocols::loop_modeling::LoopMoverprotected
do_apply(Pose &pose)protocols::loop_modeling::LoopProtocolprotectedvirtual
protocols::loop_modeling::LoopMover::do_apply(Pose &pose, Loop const &loop)protocols::loop_modeling::LoopMoverprotectedvirtual
dont_manage_score_function()protocols::loop_modeling::LoopMoverprotected
Filters_map typedefprotocols::moves::Mover
final_temp_protocols::loop_modeling::LoopProtocolprivate
finish_protocol(Pose &pose)protocols::loop_modeling::LoopProtocolprivate
fresh_instance() const protocols::moves::Movervirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_loops() const protocols::loop_modeling::LoopMover
get_name() const protocols::loop_modeling::LoopProtocolinlinevirtual
get_native_pose() const protocols::moves::Mover
get_nested_loop_movers() const protocols::loop_modeling::LoopMoverprotected
get_score_function() const protocols::loop_modeling::LoopMover
get_score_function()protocols::loop_modeling::LoopMover
get_type() const protocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
initial_temp_protocols::loop_modeling::LoopProtocolprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
loggers_protocols::loop_modeling::LoopProtocolprivate
LoopMover()protocols::loop_modeling::LoopMover
LoopProtocol()protocols::loop_modeling::LoopProtocol
mark_as_default()protocols::loop_modeling::LoopProtocol
monte_carlo_protocols::loop_modeling::LoopProtocolprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
mover_cycles_protocols::loop_modeling::LoopProtocolprivate
movers_protocols::loop_modeling::LoopProtocolprivate
name()protocols::moves::Moverinlinestatic
operator=(Mover const &other)protocols::moves::Mover
original_tree_protocols::loop_modeling::LoopProtocolprivate
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data, protocols::filters::Filters_map const &filters, protocols::moves::Movers_map const &movers, Pose const &pose)protocols::loop_modeling::LoopProtocolvirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
protocol_protocols::loop_modeling::LoopProtocolprivate
ramp_score_function(Size iteration)protocols::loop_modeling::LoopProtocolprivate
ramp_sfxn_rama_protocols::loop_modeling::LoopProtocolprivate
ramp_sfxn_rep_protocols::loop_modeling::LoopProtocolprivate
ramp_temp_protocols::loop_modeling::LoopProtocolprivate
ramp_temperature(Size iteration)protocols::loop_modeling::LoopProtocolprivate
refiners_protocols::loop_modeling::LoopProtocolprivate
register_nested_loop_mover(LoopMoverSubclassOP mover)protocols::loop_modeling::LoopMoverinlineprotected
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
request_fold_tree() const protocols::loop_modeling::LoopMovervirtual
reset_status()protocols::moves::Mover
save_state(SerializableState &state)protocols::moves::Movervirtual
scale_temp_cycles_protocols::loop_modeling::LoopProtocolprivate
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_loop(Loop const &loop)protocols::loop_modeling::LoopMover
set_loops(Loops const &loops)protocols::loop_modeling::LoopMover
set_mover_cycles(Size x)protocols::loop_modeling::LoopProtocol
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_rama_term_ramping(bool value)protocols::loop_modeling::LoopProtocol
set_repulsive_term_ramping(bool value)protocols::loop_modeling::LoopProtocol
set_score_function(core::scoring::ScoreFunctionOP sfxn)protocols::loop_modeling::LoopMover
set_sfxn_cycles(Size x)protocols::loop_modeling::LoopProtocol
set_temp_cycles(Size x, bool times_loop_length=false)protocols::loop_modeling::LoopProtocol
set_temperature_ramping(bool value)protocols::loop_modeling::LoopProtocol
set_temperature_schedule(Real start, Real stop)protocols::loop_modeling::LoopProtocol
set_type(std::string const &setting)protocols::moves::Moverinline
setup_fold_tree(Pose &pose, Loops const &loops, FoldTreeRequest request)protocols::loop_modeling::LoopMoverstatic
sfxn_cycles_protocols::loop_modeling::LoopProtocolprivate
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
start_protocol(Pose &pose)protocols::loop_modeling::LoopProtocolprivate
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
temp_cycles_protocols::loop_modeling::LoopProtocolprivate
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
trust_fold_tree()protocols::loop_modeling::LoopMover
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
was_successful() const protocols::loop_modeling::LoopMover
~LoopMover()protocols::loop_modeling::LoopMover
~LoopProtocol()protocols::loop_modeling::LoopProtocol
~Mover()protocols::moves::Movervirtual