protocols::fldsgn::filters::SecondaryStructureCountFilter Class Reference

#include <SecondaryStructureCountFilter.hh>

Public Types
typedef protocols::filters::Filter	Filter
typedef std::string	String
typedef protocols::filters::FilterOP	FilterOP
typedef core::pose::Pose	Pose
typedef utility::tag::TagCOP	TagCOP
typedef protocols::filters::Filters_map	Filters_map
typedef basic::datacache::DataMap	DataMap
typedef protocols::moves::Movers_map	Movers_map

Public Member Functions
	SecondaryStructureCountFilter ()
virtual	~SecondaryStructureCountFilter ()
virtual FilterOP	clone () const
virtual FilterOP	fresh_instance () const
virtual std::string	name () const
virtual void	parse_my_tag (TagCOP tag, basic::datacache::DataMap &, Filters_map const &, Movers_map const &, Pose const &)
	parse xml More...
bool	apply (Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...
core::Real	report_sm (Pose const &pose) const
	used to report filter internals through a score or silent file More...
void	report (std::ostream &out, Pose const &pose) const
core::Size	compute (Pose const &pose) const
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

Private Attributes
core::Size	num_helix_pose_
core::Size	num_sheet_pose_
core::Size	num_loop_pose_
core::Size	num_helix_
core::Size	num_sheet_
core::Size	num_loop_
core::Size	num_helix_sheet_
core::Size	min_helix_length_
core::Size	max_helix_length_
core::Size	min_sheet_length_
core::Size	max_sheet_length_
core::Size	min_loop_length_
core::Size	max_loop_length_
bool	filter_helix_
bool	filter_sheet_
bool	filter_loop_
bool	filter_helix_sheet_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef basic::datacache::DataMap protocols::fldsgn::filters::SecondaryStructureCountFilter::DataMap

typedef protocols::filters::Filter protocols::fldsgn::filters::SecondaryStructureCountFilter::Filter

typedef protocols::filters::FilterOP protocols::fldsgn::filters::SecondaryStructureCountFilter::FilterOP

typedef protocols::filters::Filters_map protocols::fldsgn::filters::SecondaryStructureCountFilter::Filters_map

typedef protocols::moves::Movers_map protocols::fldsgn::filters::SecondaryStructureCountFilter::Movers_map

typedef core::pose::Pose protocols::fldsgn::filters::SecondaryStructureCountFilter::Pose

typedef std::string protocols::fldsgn::filters::SecondaryStructureCountFilter::String

typedef utility::tag::TagCOP protocols::fldsgn::filters::SecondaryStructureCountFilter::TagCOP

Constructor & Destructor Documentation

protocols::fldsgn::filters::SecondaryStructureCountFilter::SecondaryStructureCountFilter

(

)

Referenced by clone(), and fresh_instance().

virtual protocols::fldsgn::filters::SecondaryStructureCountFilter::~SecondaryStructureCountFilter ( )

inlinevirtual

Member Function Documentation

bool protocols::fldsgn::filters::SecondaryStructureCountFilter::apply ( Pose const &  pose ) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), filter_helix_, filter_helix_sheet_, filter_loop_, filter_sheet_, num_helix_, num_helix_pose_, num_helix_sheet_, num_loop_, num_loop_pose_, num_sheet_, and num_sheet_pose_.

virtual FilterOP protocols::fldsgn::filters::SecondaryStructureCountFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References SecondaryStructureCountFilter().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::compute

(

Pose const &

pose

)

const

References protocols::simple_filters::dssp(), core::scoring::dssp::Dssp::get_dssp_secstruct(), max_helix_length_, max_loop_length_, max_sheet_length_, min_helix_length_, min_loop_length_, min_sheet_length_, num_helix_pose_, num_loop_pose_, num_sheet_pose_, and tr.

Referenced by apply(), report(), and report_sm().

virtual FilterOP protocols::fldsgn::filters::SecondaryStructureCountFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References SecondaryStructureCountFilter().

virtual std::string protocols::fldsgn::filters::SecondaryStructureCountFilter::name ( ) const

inlinevirtual

Reimplemented from protocols::filters::Filter.

void protocols::fldsgn::filters::SecondaryStructureCountFilter::parse_my_tag ( TagCOP  tag, basic::datacache::DataMap &  , Filters_map const &  , Movers_map const &  , Pose const &    )

virtual

parse xml

Reimplemented from protocols::filters::Filter.

References filter_helix_, filter_helix_sheet_, filter_loop_, filter_sheet_, max_helix_length_, max_loop_length_, max_sheet_length_, min_helix_length_, min_loop_length_, min_sheet_length_, num_helix_, num_helix_sheet_, num_loop_, num_sheet_, runtime_assert, and tr.

void protocols::fldsgn::filters::SecondaryStructureCountFilter::report ( std::ostream &  out, Pose const &  pose  ) const

virtual

Reimplemented from protocols::filters::Filter.

References compute(), num_helix_pose_, and num_sheet_pose_.

core::Real protocols::fldsgn::filters::SecondaryStructureCountFilter::report_sm ( Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

bool protocols::fldsgn::filters::SecondaryStructureCountFilter::filter_helix_

private

Referenced by apply(), and parse_my_tag().

bool protocols::fldsgn::filters::SecondaryStructureCountFilter::filter_helix_sheet_

private

Referenced by apply(), and parse_my_tag().

bool protocols::fldsgn::filters::SecondaryStructureCountFilter::filter_loop_

private

Referenced by apply(), and parse_my_tag().

bool protocols::fldsgn::filters::SecondaryStructureCountFilter::filter_sheet_

private

Referenced by apply(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::max_helix_length_

private

Referenced by compute(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::max_loop_length_

private

Referenced by compute(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::max_sheet_length_

private

Referenced by compute(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::min_helix_length_

private

Referenced by compute(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::min_loop_length_

private

Referenced by compute(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::min_sheet_length_

private

Referenced by compute(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::num_helix_

private

Referenced by apply(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::num_helix_pose_

mutableprivate

Referenced by apply(), compute(), and report().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::num_helix_sheet_

private

Referenced by apply(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::num_loop_

private

Referenced by apply(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::num_loop_pose_

mutableprivate

Referenced by apply(), and compute().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::num_sheet_

private

Referenced by apply(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::num_sheet_pose_

mutableprivate

Referenced by apply(), compute(), and report().

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The documentation for this class was generated from the following files:

• src/protocols/fldsgn/filters/SecondaryStructureCountFilter.hh
• src/protocols/fldsgn/filters/SecondaryStructureCountFilter.cc