Rosetta Protocols  2014.35
Public Types | Public Member Functions | Private Attributes | List of all members
protocols::fldsgn::filters::SecondaryStructureCountFilter Class Reference

#include <SecondaryStructureCountFilter.hh>

Public Types

typedef protocols::filters::Filter Filter
 
typedef std::string String
 
typedef
protocols::filters::FilterOP 
FilterOP
 
typedef core::pose::Pose Pose
 
typedef utility::tag::TagCOP TagCOP
 
typedef
protocols::filters::Filters_map 
Filters_map
 
typedef basic::datacache::DataMap DataMap
 
typedef
protocols::moves::Movers_map 
Movers_map
 

Public Member Functions

 SecondaryStructureCountFilter ()
 
virtual ~SecondaryStructureCountFilter ()
 
virtual FilterOP clone () const
 
virtual FilterOP fresh_instance () const
 
virtual std::string name () const
 
virtual void parse_my_tag (TagCOP tag, basic::datacache::DataMap &, Filters_map const &, Movers_map const &, Pose const &)
 parse xml More...
 
bool apply (Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
 
core::Real report_sm (Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
void report (std::ostream &out, Pose const &pose) const
 
core::Size compute (Pose const &pose) const
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 

Private Attributes

core::Size num_helix_pose_
 
core::Size num_sheet_pose_
 
core::Size num_loop_pose_
 
core::Size num_helix_
 
core::Size num_sheet_
 
core::Size num_loop_
 
core::Size num_helix_sheet_
 
core::Size min_helix_length_
 
core::Size max_helix_length_
 
core::Size min_sheet_length_
 
core::Size max_sheet_length_
 
core::Size min_loop_length_
 
core::Size max_loop_length_
 
bool filter_helix_
 
bool filter_sheet_
 
bool filter_loop_
 
bool filter_helix_sheet_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::fldsgn::filters::SecondaryStructureCountFilter::SecondaryStructureCountFilter ( )

Referenced by clone(), and fresh_instance().

virtual protocols::fldsgn::filters::SecondaryStructureCountFilter::~SecondaryStructureCountFilter ( )
inlinevirtual

Member Function Documentation

bool protocols::fldsgn::filters::SecondaryStructureCountFilter::apply ( Pose const &  pose) const
virtual
virtual FilterOP protocols::fldsgn::filters::SecondaryStructureCountFilter::clone ( ) const
inlinevirtual
core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::compute ( Pose const &  pose) const
virtual FilterOP protocols::fldsgn::filters::SecondaryStructureCountFilter::fresh_instance ( ) const
inlinevirtual
virtual std::string protocols::fldsgn::filters::SecondaryStructureCountFilter::name ( ) const
inlinevirtual

Reimplemented from protocols::filters::Filter.

void protocols::fldsgn::filters::SecondaryStructureCountFilter::parse_my_tag ( TagCOP  tag,
basic::datacache::DataMap ,
Filters_map const &  ,
Movers_map const &  ,
Pose const &   
)
virtual
void protocols::fldsgn::filters::SecondaryStructureCountFilter::report ( std::ostream &  out,
Pose const &  pose 
) const
virtual
core::Real protocols::fldsgn::filters::SecondaryStructureCountFilter::report_sm ( Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

bool protocols::fldsgn::filters::SecondaryStructureCountFilter::filter_helix_
private

Referenced by apply(), and parse_my_tag().

bool protocols::fldsgn::filters::SecondaryStructureCountFilter::filter_helix_sheet_
private

Referenced by apply(), and parse_my_tag().

bool protocols::fldsgn::filters::SecondaryStructureCountFilter::filter_loop_
private

Referenced by apply(), and parse_my_tag().

bool protocols::fldsgn::filters::SecondaryStructureCountFilter::filter_sheet_
private

Referenced by apply(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::max_helix_length_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::max_loop_length_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::max_sheet_length_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::min_helix_length_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::min_loop_length_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::min_sheet_length_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::num_helix_
private

Referenced by apply(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::num_helix_pose_
mutableprivate

Referenced by apply(), compute(), and report().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::num_helix_sheet_
private

Referenced by apply(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::num_loop_
private

Referenced by apply(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::num_loop_pose_
mutableprivate

Referenced by apply(), and compute().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::num_sheet_
private

Referenced by apply(), and parse_my_tag().

core::Size protocols::fldsgn::filters::SecondaryStructureCountFilter::num_sheet_pose_
mutableprivate

Referenced by apply(), compute(), and report().


The documentation for this class was generated from the following files: