cached_score(FragmentCandidateOP, FragmentScoreMapOP) | protocols::frag_picker::scores::ProfileScore | virtual |
cached_scores_id_ | protocols::frag_picker::scores::ProfileScore | private |
CachingScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name) | protocols::frag_picker::scores::CachingScoringMethod | inline |
clean_up() | protocols::frag_picker::scores::ProfileScore | inlinevirtual |
clear() | protocols::frag_picker::scores::ProfileScore | private |
describe_score(FragmentCandidateOP f, FragmentScoreMapOP empty_map, std::ostream &out) | protocols::frag_picker::scores::ProfileScore | |
do_caching(VallChunkOP) | protocols::frag_picker::scores::ProfileScore | virtual |
FragmentScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
get_id() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
get_min_allowed_score() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
get_priority() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
get_score_name() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
get_use_lowest() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
id_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
lowest_acceptable_value_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
name_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
priority_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
profile_scoring_ | protocols::frag_picker::scores::ProfileScore | private |
ProfileScore(Size priority, Real lowest_acceptable_value, bool use_lowest, sequence::SequenceProfileOP query_profile, sequence::ScoringSchemeOP profile_scoring, Size longest_vall_chunk) | protocols::frag_picker::scores::ProfileScore | inline |
query_profile_ | protocols::frag_picker::scores::ProfileScore | private |
score(FragmentCandidateOP fragment, FragmentScoreMapOP scores) | protocols::frag_picker::scores::CachingScoringMethod | inlinevirtual |
scores_ | protocols::frag_picker::scores::ProfileScore | protected |
set_id(Size id) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
set_min_allowed_score(Real lowest_acceptable_value) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
use_lowest_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
~ProfileScore() | protocols::frag_picker::scores::ProfileScore | |