Rosetta Protocols  2014.35
Public Member Functions | Protected Attributes | List of all members
protocols::frag_picker::scores::FragmentScoringMethod Class Referenceabstract

a fragment candidate score More...

#include <FragmentScoringMethod.hh>

Public Member Functions

 FragmentScoringMethod (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)
 
virtual bool score (FragmentCandidateOP, FragmentScoreMapOP)=0
 
std::stringget_score_name ()
 Returns a name of this scoring method. More...
 
Size get_id ()
 Returns an integer index assigned to this scoring method by a scoring manager. More...
 
void set_id (Size id)
 Sets a new integer index for this scoring method. More...
 
Size get_priority ()
 Returns a priority of this scoring method. More...
 
Real get_min_allowed_score ()
 Returns the lowest acceptable score value for this scoring method. More...
 
bool get_use_lowest ()
 Returns the boolean choice on using the above lowest acceptable score value. More...
 
void set_min_allowed_score (Real lowest_acceptable_value)
 Sets a new value of the lowest acceptable score. More...
 

Protected Attributes

Size id_
 
Size priority_
 
std::string name_
 
Real lowest_acceptable_value_
 
bool use_lowest_
 

Detailed Description

a fragment candidate score

Constructor & Destructor Documentation

protocols::frag_picker::scores::FragmentScoringMethod::FragmentScoringMethod ( Size  priority,
Real  lowest_acceptable_value,
bool  use_lowest,
std::string  name 
)
inline

Member Function Documentation

Size protocols::frag_picker::scores::FragmentScoringMethod::get_id ( )
inline

Returns an integer index assigned to this scoring method by a scoring manager.

Real protocols::frag_picker::scores::FragmentScoringMethod::get_min_allowed_score ( )
inline

Returns the lowest acceptable score value for this scoring method.

Detailed: Fragments that are below the threshold will be discarded
Size protocols::frag_picker::scores::FragmentScoringMethod::get_priority ( )
inline

Returns a priority of this scoring method.

Detailed: The higher the priority, the earlier a given scoring method is evaluated
std::string& protocols::frag_picker::scores::FragmentScoringMethod::get_score_name ( )
inline

Returns a name of this scoring method.

bool protocols::frag_picker::scores::FragmentScoringMethod::get_use_lowest ( )
inline

Returns the boolean choice on using the above lowest acceptable score value.

Detailed: False means there is no lowest acceptable score
virtual bool protocols::frag_picker::scores::FragmentScoringMethod::score ( FragmentCandidateOP  ,
FragmentScoreMapOP   
)
pure virtual

Implemented in protocols::frag_picker::scores::HydrophobicityProfileSimilarity, protocols::frag_picker::scores::HydrophobicitySimilarity, protocols::frag_picker::scores::ABEGO_SS_Score, protocols::frag_picker::scores::FragmentChunkCrms, protocols::frag_picker::scores::SecondarySimilarity, protocols::frag_picker::scores::SolventAccessibility, protocols::frag_picker::scores::Psi, protocols::frag_picker::scores::FragmentCrmsdResDepth, protocols::frag_picker::scores::Phi, protocols::frag_picker::scores::FragmentCrmsd, protocols::frag_picker::scores::PartialSecondarySimilarity, protocols::frag_picker::scores::FragmentAllAtomCrmsd, protocols::frag_picker::scores::TalosSSSimilarity, protocols::frag_picker::scores::CachingScoringMethod, protocols::frag_picker::scores::FragmentDME, protocols::frag_picker::scores::CSScore, protocols::frag_picker::scores::RDCScore, protocols::frag_picker::scores::RamaScore, protocols::frag_picker::scores::AmbigCSScore, protocols::frag_picker::scores::ConstScore, protocols::frag_picker::scores::GunnCostScore, protocols::frag_picker::scores::ProfileScoreL1, protocols::frag_picker::scores::SecondaryIdentity, protocols::frag_picker::scores::PhiPsiSquareWell, protocols::frag_picker::scores::PCS_FragDistance, protocols::frag_picker::scores::PhiPsiRmsd, protocols::frag_picker::scores::DisulfideDistance, protocols::frag_picker::scores::MidPhiOut, protocols::frag_picker::scores::ProfileScoreBlosum62, protocols::frag_picker::scores::ProlinePhiScore, protocols::frag_picker::scores::ScoreEValuator, protocols::frag_picker::scores::SequenceIdentity, protocols::frag_picker::scores::JCoupling, protocols::frag_picker::scores::MidPsiOut, protocols::frag_picker::scores::ProfileScoreStructL1, protocols::frag_picker::scores::ProfileScoreSubMatrix, protocols::frag_picker::scores::BFactor, protocols::frag_picker::scores::DisulfideIdentity, and protocols::frag_picker::scores::RDCScore.

void protocols::frag_picker::scores::FragmentScoringMethod::set_id ( Size  id)
inline

Sets a new integer index for this scoring method.

Detailed: the method should be called only by a scoring manager
void protocols::frag_picker::scores::FragmentScoringMethod::set_min_allowed_score ( Real  lowest_acceptable_value)
inline

Sets a new value of the lowest acceptable score.

Detailed: Fragments that are below the threshold will be discarded

Member Data Documentation

Size protocols::frag_picker::scores::FragmentScoringMethod::id_
protected

Referenced by protocols::frag_picker::scores::ProfileScoreStructL1::cached_score(), protocols::frag_picker::scores::ProfileScoreSubMatrix::cached_score(), protocols::frag_picker::scores::AtomPairConstraintsScore::cached_score(), protocols::frag_picker::scores::MidPsiOut::cached_score(), protocols::frag_picker::scores::DisulfideDistance::cached_score(), protocols::frag_picker::scores::ProfileScoreBlosum62::cached_score(), protocols::frag_picker::scores::MidPhiOut::cached_score(), protocols::frag_picker::scores::PhiPsiRmsd::cached_score(), protocols::frag_picker::scores::PCS_FragDistance::cached_score(), protocols::frag_picker::scores::ProfileScoreL1::cached_score(), protocols::frag_picker::scores::GunnCostScore::cached_score(), protocols::frag_picker::scores::AmbigCSScore::cached_score(), protocols::frag_picker::scores::RamaScore::cached_score(), protocols::frag_picker::scores::DihedralConstraintsScore::cached_score(), protocols::frag_picker::scores::InterbondAngleScore::cached_score(), protocols::frag_picker::scores::CSScore::cached_score(), protocols::frag_picker::scores::FragmentDME::cached_score(), protocols::frag_picker::scores::SecondarySimilarity::cached_score(), protocols::frag_picker::scores::FragmentCrmsd::cached_score(), protocols::frag_picker::scores::FragmentCrmsdResDepth::cached_score(), protocols::frag_picker::scores::LAMBEGO_Similarity::cached_score(), protocols::frag_picker::scores::TorsionBinSimilarity::cached_score(), protocols::frag_picker::scores::ABEGO_SS_Score::cached_score(), protocols::frag_picker::scores::DisulfideIdentity::describe_score(), protocols::frag_picker::scores::BFactor::describe_score(), protocols::frag_picker::scores::ProlinePhiScore::describe_score(), protocols::frag_picker::scores::SequenceIdentity::describe_score(), protocols::frag_picker::scores::PhiPsiRmsd::describe_score(), protocols::frag_picker::scores::SecondaryIdentity::describe_score(), protocols::frag_picker::scores::BFactor::score(), protocols::frag_picker::scores::DisulfideIdentity::score(), protocols::frag_picker::scores::RDCScore::score(), protocols::frag_picker::scores::ProfileScoreStructL1::score(), protocols::frag_picker::scores::JCoupling::score(), protocols::frag_picker::scores::SequenceIdentity::score(), protocols::frag_picker::scores::ProlinePhiScore::score(), protocols::frag_picker::scores::PhiPsiSquareWell::score(), protocols::frag_picker::scores::GunnCostScore::score(), protocols::frag_picker::scores::ProfileScoreL1::score(), protocols::frag_picker::scores::SecondaryIdentity::score(), protocols::frag_picker::scores::ConstScore::score(), protocols::frag_picker::scores::FragmentDME::score(), protocols::frag_picker::scores::FragmentAllAtomCrmsd::score(), protocols::frag_picker::scores::PartialSecondarySimilarity::score(), protocols::frag_picker::scores::FragmentCrmsd::score(), protocols::frag_picker::scores::Phi::score(), protocols::frag_picker::scores::FragmentCrmsdResDepth::score(), protocols::frag_picker::scores::Psi::score(), protocols::frag_picker::scores::SolventAccessibility::score(), protocols::frag_picker::scores::FragmentChunkCrms::score(), protocols::frag_picker::scores::SecondarySimilarity::score(), protocols::frag_picker::scores::ABEGO_SS_Score::score(), protocols::frag_picker::scores::HydrophobicitySimilarity::score(), and protocols::frag_picker::scores::HydrophobicityProfileSimilarity::score().

Real protocols::frag_picker::scores::FragmentScoringMethod::lowest_acceptable_value_
protected

Referenced by protocols::frag_picker::scores::ProfileScoreStructL1::cached_score(), protocols::frag_picker::scores::ProfileScoreSubMatrix::cached_score(), protocols::frag_picker::scores::AtomPairConstraintsScore::cached_score(), protocols::frag_picker::scores::DisulfideDistance::cached_score(), protocols::frag_picker::scores::ProfileScoreBlosum62::cached_score(), protocols::frag_picker::scores::PCS_FragDistance::cached_score(), protocols::frag_picker::scores::PhiPsiRmsd::cached_score(), protocols::frag_picker::scores::ProfileScoreL1::cached_score(), protocols::frag_picker::scores::GunnCostScore::cached_score(), protocols::frag_picker::scores::AmbigCSScore::cached_score(), protocols::frag_picker::scores::RamaScore::cached_score(), protocols::frag_picker::scores::DihedralConstraintsScore::cached_score(), protocols::frag_picker::scores::InterbondAngleScore::cached_score(), protocols::frag_picker::scores::CSScore::cached_score(), protocols::frag_picker::scores::FragmentDME::cached_score(), protocols::frag_picker::scores::SecondarySimilarity::cached_score(), protocols::frag_picker::scores::FragmentCrmsd::cached_score(), protocols::frag_picker::scores::FragmentCrmsdResDepth::cached_score(), protocols::frag_picker::scores::LAMBEGO_Similarity::cached_score(), protocols::frag_picker::scores::TorsionBinSimilarity::cached_score(), protocols::frag_picker::scores::ABEGO_SS_Score::cached_score(), protocols::frag_picker::scores::DisulfideIdentity::describe_score(), protocols::frag_picker::scores::BFactor::describe_score(), protocols::frag_picker::scores::ProlinePhiScore::describe_score(), protocols::frag_picker::scores::SequenceIdentity::describe_score(), protocols::frag_picker::scores::PhiPsiRmsd::describe_score(), protocols::frag_picker::scores::SecondaryIdentity::describe_score(), protocols::frag_picker::scores::DisulfideIdentity::score(), protocols::frag_picker::scores::BFactor::score(), protocols::frag_picker::scores::RDCScore::score(), protocols::frag_picker::scores::ProfileScoreStructL1::score(), protocols::frag_picker::scores::JCoupling::score(), protocols::frag_picker::scores::SequenceIdentity::score(), protocols::frag_picker::scores::ProlinePhiScore::score(), protocols::frag_picker::scores::PhiPsiSquareWell::score(), protocols::frag_picker::scores::ProfileScoreL1::score(), protocols::frag_picker::scores::SecondaryIdentity::score(), protocols::frag_picker::scores::GunnCostScore::score(), protocols::frag_picker::scores::FragmentDME::score(), protocols::frag_picker::scores::FragmentAllAtomCrmsd::score(), protocols::frag_picker::scores::PartialSecondarySimilarity::score(), protocols::frag_picker::scores::FragmentCrmsd::score(), protocols::frag_picker::scores::Phi::score(), protocols::frag_picker::scores::FragmentCrmsdResDepth::score(), protocols::frag_picker::scores::Psi::score(), protocols::frag_picker::scores::SolventAccessibility::score(), protocols::frag_picker::scores::FragmentChunkCrms::score(), protocols::frag_picker::scores::SecondarySimilarity::score(), protocols::frag_picker::scores::ABEGO_SS_Score::score(), protocols::frag_picker::scores::HydrophobicitySimilarity::score(), and protocols::frag_picker::scores::HydrophobicityProfileSimilarity::score().

std::string protocols::frag_picker::scores::FragmentScoringMethod::name_
protected
Size protocols::frag_picker::scores::FragmentScoringMethod::priority_
protected
bool protocols::frag_picker::scores::FragmentScoringMethod::use_lowest_
protected

Referenced by protocols::frag_picker::scores::ProfileScoreStructL1::cached_score(), protocols::frag_picker::scores::ProfileScoreSubMatrix::cached_score(), protocols::frag_picker::scores::AtomPairConstraintsScore::cached_score(), protocols::frag_picker::scores::DisulfideDistance::cached_score(), protocols::frag_picker::scores::ProfileScoreBlosum62::cached_score(), protocols::frag_picker::scores::PCS_FragDistance::cached_score(), protocols::frag_picker::scores::PhiPsiRmsd::cached_score(), protocols::frag_picker::scores::ProfileScoreL1::cached_score(), protocols::frag_picker::scores::GunnCostScore::cached_score(), protocols::frag_picker::scores::AmbigCSScore::cached_score(), protocols::frag_picker::scores::RamaScore::cached_score(), protocols::frag_picker::scores::DihedralConstraintsScore::cached_score(), protocols::frag_picker::scores::InterbondAngleScore::cached_score(), protocols::frag_picker::scores::CSScore::cached_score(), protocols::frag_picker::scores::FragmentDME::cached_score(), protocols::frag_picker::scores::SecondarySimilarity::cached_score(), protocols::frag_picker::scores::FragmentCrmsd::cached_score(), protocols::frag_picker::scores::FragmentCrmsdResDepth::cached_score(), protocols::frag_picker::scores::LAMBEGO_Similarity::cached_score(), protocols::frag_picker::scores::TorsionBinSimilarity::cached_score(), protocols::frag_picker::scores::ABEGO_SS_Score::cached_score(), protocols::frag_picker::scores::DisulfideIdentity::describe_score(), protocols::frag_picker::scores::BFactor::describe_score(), protocols::frag_picker::scores::ProlinePhiScore::describe_score(), protocols::frag_picker::scores::SequenceIdentity::describe_score(), protocols::frag_picker::scores::PhiPsiRmsd::describe_score(), protocols::frag_picker::scores::SecondaryIdentity::describe_score(), protocols::frag_picker::scores::DisulfideIdentity::score(), protocols::frag_picker::scores::BFactor::score(), protocols::frag_picker::scores::RDCScore::score(), protocols::frag_picker::scores::ProfileScoreStructL1::score(), protocols::frag_picker::scores::JCoupling::score(), protocols::frag_picker::scores::SequenceIdentity::score(), protocols::frag_picker::scores::ProlinePhiScore::score(), protocols::frag_picker::scores::PhiPsiSquareWell::score(), protocols::frag_picker::scores::ProfileScoreL1::score(), protocols::frag_picker::scores::SecondaryIdentity::score(), protocols::frag_picker::scores::GunnCostScore::score(), protocols::frag_picker::scores::FragmentDME::score(), protocols::frag_picker::scores::FragmentAllAtomCrmsd::score(), protocols::frag_picker::scores::PartialSecondarySimilarity::score(), protocols::frag_picker::scores::FragmentCrmsd::score(), protocols::frag_picker::scores::Phi::score(), protocols::frag_picker::scores::FragmentCrmsdResDepth::score(), protocols::frag_picker::scores::Psi::score(), protocols::frag_picker::scores::SolventAccessibility::score(), protocols::frag_picker::scores::FragmentChunkCrms::score(), protocols::frag_picker::scores::SecondarySimilarity::score(), protocols::frag_picker::scores::ABEGO_SS_Score::score(), protocols::frag_picker::scores::HydrophobicitySimilarity::score(), and protocols::frag_picker::scores::HydrophobicityProfileSimilarity::score().


The documentation for this class was generated from the following file: