Rosetta Protocols  2014.35
protocols::match::output::WriteUpstreamCoordinateKinemage Member List

This is the complete list of members for protocols::match::output::WriteUpstreamCoordinateKinemage, including all inherited members.

active_site_grid() const protocols::match::downstream::DownstreamAlgorithminlineprotected
active_site_grid_set() const protocols::match::downstream::DownstreamAlgorithminlineprotected
are_colliding(core::conformation::Residue const &us_res, core::conformation::Residue const &ds_res, utility::vector1< core::id::AtomID > const &ds_atoms, utility::vector1< core::Size > const &catalytic_atoms) const protocols::match::downstream::DownstreamAlgorithm
bbgrid() const protocols::match::downstream::DownstreamAlgorithminlineprotected
build(Size const scaffold_build_point_id, Size const upstream_conf_id, core::conformation::Residue const &upstream_residue) const protocols::match::output::WriteUpstreamCoordinateKinemagevirtual
build_hits_at_all_positions(Matcher &matcher)protocols::match::downstream::DownstreamAlgorithmvirtual
clone() const protocols::match::output::WriteUpstreamCoordinateKinemagevirtual
default_build_hits_at_all_positions(Matcher const &matcher) const protocols::match::downstream::DownstreamAlgorithmprotected
DownstreamAlgorithm(Size geom_cst_id)protocols::match::downstream::DownstreamAlgorithm
DownstreamAlgorithm(DownstreamAlgorithm const &)protocols::match::downstream::DownstreamAlgorithm
dswriter_protocols::match::output::WriteUpstreamCoordinateKinemageprivate
file_out_protocols::match::output::WriteUpstreamCoordinateKinemageprivate
generates_primary_hits() const protocols::match::output::WriteUpstreamCoordinateKinemagevirtual
geom_cst_id() const protocols::match::downstream::DownstreamAlgorithm
get_dsbuilder() const protocols::match::downstream::DownstreamAlgorithm
hits_to_include_with_partial_match(match_dspos1 const &m) const protocols::match::output::WriteUpstreamCoordinateKinemagevirtual
kinemage_file_name_protocols::match::output::WriteUpstreamCoordinateKinemageprivate
last_scaffold_build_point_protocols::match::output::WriteUpstreamCoordinateKinemagemutableprivate
match_algorithm_protocols::match::output::WriteUpstreamCoordinateKinemageprivate
n_downstream_to_output_protocols::match::output::WriteUpstreamCoordinateKinemageprivate
n_output_so_far_protocols::match::output::WriteUpstreamCoordinateKinemagemutableprivate
n_possible_hits_per_upstream_conformation() const protocols::match::output::WriteUpstreamCoordinateKinemagevirtual
nkins_protocols::match::output::WriteUpstreamCoordinateKinemagemutableprivate
operator=(DownstreamAlgorithm const &)protocols::match::downstream::DownstreamAlgorithm
ostr_protocols::match::output::WriteUpstreamCoordinateKinemageprivate
prepare_for_match_enumeration(Matcher const &)protocols::match::downstream::DownstreamAlgorithmvirtual
respond_to_peripheral_hitlist_change(Matcher &matcher)protocols::match::downstream::DownstreamAlgorithmvirtual
respond_to_primary_hitlist_change(Matcher &matcher, Size round_just_completed)protocols::match::downstream::DownstreamAlgorithmvirtual
return_pseudo_hits() const protocols::match::output::WriteUpstreamCoordinateKinemageinline
return_pseudo_hits(bool setting)protocols::match::output::WriteUpstreamCoordinateKinemageinline
return_pseudo_hits_protocols::match::output::WriteUpstreamCoordinateKinemageprivate
set_active_site_grid(ActiveSiteGridCOP active_site_grid)protocols::match::downstream::DownstreamAlgorithm
set_bb_grid(BumpGridCOP bbgrid)protocols::match::downstream::DownstreamAlgorithm
set_downstream_writer(DownstreamCoordinateKinemageWriterCOP dswriter)protocols::match::output::WriteUpstreamCoordinateKinemage
set_dsbuilder(DownstreamBuilderOP dsbuilder)protocols::match::downstream::DownstreamAlgorithm
set_kinemage_file_name(std::string const &filename)protocols::match::output::WriteUpstreamCoordinateKinemage
set_match_algorithm(downstream::ClassicMatchAlgorithmCOP algorithm)protocols::match::output::WriteUpstreamCoordinateKinemage
set_n_downstream_to_output(Size n_downstream_to_output)protocols::match::output::WriteUpstreamCoordinateKinemage
Size typedefprotocols::match::output::WriteUpstreamCoordinateKinemage
upstream_only() const protocols::match::output::WriteUpstreamCoordinateKinemagevirtual
Vector typedefprotocols::match::output::WriteUpstreamCoordinateKinemage
WriteUpstreamCoordinateKinemage()protocols::match::output::WriteUpstreamCoordinateKinemage
WriteUpstreamCoordinateKinemage(std::string const &fname)protocols::match::output::WriteUpstreamCoordinateKinemage
WriteUpstreamCoordinateKinemage(std::ostream &ostr)protocols::match::output::WriteUpstreamCoordinateKinemage
~DownstreamAlgorithm()protocols::match::downstream::DownstreamAlgorithmvirtual
~WriteUpstreamCoordinateKinemage()protocols::match::output::WriteUpstreamCoordinateKinemagevirtual