Rosetta Protocols  2014.35
protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizer Member List

This is the complete list of members for protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizer, including all inherited members.

allow_insert_protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
allow_variable_bond_geometry_protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
apply(core::pose::Pose &pose_to_visualize)protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizervirtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
base_centroid_checker_protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::moves::Movervirtual
create()protocols::moves::Movervirtual
Filters_map typedefprotocols::moves::Mover
fixed_res_protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
freeze_sugar_torsions(core::kinematics::MoveMap &mm, Size const nres) const protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
fresh_instance() const protocols::moves::Movervirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_default_movemap(core::pose::Pose const &pose)protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizervirtual
get_native_pose() const protocols::moves::Mover
get_type() const protocols::moves::Moverinline
get_working_moving_res(Size const &nres) const protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
minimized_pose_list() const protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerinline
minimized_pose_list_protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
move_map_protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
native_edensity_score_checker(core::pose::Pose &pose, core::pose::Pose &native_pose) const protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
operator=(Mover const &other)protocols::moves::Mover
options_protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
original_geometry_weight_protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
output_empty_minimizer_silent_file() const protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
output_minimized_pose_list()protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
output_parameters()protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
output_pose_wrapper(std::string const &tag, core::pose::Pose &pose, std::string const &out_silent_file) const protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizer
output_pose_wrapper(std::string &tag, char tag_first_char, core::pose::Pose &pose, core::io::silent::SilentFileData &silent_file_data, std::string const out_silent_file) const protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Movervirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
pass_all_pose_screens(core::pose::Pose &pose, std::string const in_tag, core::io::silent::SilentFileData &silent_file_data) const protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
perform_electron_density_screen_protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
Pose typedefprotocols::moves::Mover
pose_list_protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
pose_to_native_map_protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
PoseCOP typedefprotocols::moves::Mover
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
save_state(SerializableState &state)protocols::moves::Movervirtual
scorefxn_protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
set_allow_insert(toolbox::AllowInsertOP setting)protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerinline
set_allow_variable_bond_geometry(bool const setting)protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerinline
set_base_centroid_checker(checker::RNA_BaseCentroidCheckerOP &checker)protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizer
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_move_map(core::kinematics::MoveMapOP move_map_)protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizer
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_options(protocols::stepwise::modeler::options::StepWiseModelerOptionsOP options)protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizer
set_scorefxn(core::scoring::ScoreFunctionCOP const &scorefxn)protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizer
set_silent_file(std::string const &silent_file)protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizer
set_type(std::string const &setting)protocols::moves::Moverinline
set_user_input_VDW_bin_checker(checker::RNA_VDW_BinCheckerOP const &user_input_VDW_bin_checker)protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerinline
set_vary_bond_geometry_frequency(core::Real const setting)protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerinline
set_working_extra_minimize_res(utility::vector1< core::Size > setting)protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerinline
sfd_protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
silent_file_protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
silent_file_data()protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizer
StepWiseRNA_Minimizer(utility::vector1< core::pose::PoseOP > const &pose_list, stepwise::modeler::working_parameters::StepWiseWorkingParametersCOP &working_parameters)protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizer
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
user_input_VDW_bin_checker_protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
vary_bond_geometry_frequency_protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
working_extra_minimize_res_protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
working_parameters_protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizerprivate
~Mover()protocols::moves::Movervirtual
~StepWiseRNA_Minimizer()protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizer