Rosetta Protocols  2014.35
Functions
CanonicalSamplingMover.cc File Reference
#include <protocols/moves/CanonicalSamplingMover.hh>
#include <protocols/moves/SidechainMover.hh>
#include <protocols/moves/SidechainMover.fwd.hh>
#include <protocols/jd2/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentStruct.hh>
#include <core/io/silent/SilentStructFactory.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/mc_convergence_checks/Pool_ConvergenceCheck.hh>
#include <protocols/moves/mc_convergence_checks/MPIBPool_ConvergenceCheck.hh>
#include <protocols/moves/mc_convergence_checks/MPIHPool_ConvergenceCheck.hh>
#include <protocols/moves/mc_convergence_checks/MPIPool_ConvergenceCheck.hh>
#include <protocols/moves/mc_convergence_checks/HPool.hh>
#include <protocols/moves/mc_convergence_checks/HierarchicalLevel.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/JobOutputter.hh>
#include <basic/options/option.hh>
#include <basic/options/after_opts.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/mc.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/loops.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <utility/file/file_sys_util.hh>
#include <utility/file/PathName.hh>
#include <core/scoring/mm/MMBondAngleResidueTypeParamSet.hh>
#include <core/scoring/methods/RG_Energy_Fast.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/constraints/AtomPairConstraint.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/scoring/constraints/util.hh>
#include <core/conformation/Residue.hh>
#include <basic/Tracer.hh>
#include <basic/prof.hh>
#include <fstream>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/Fmath.hh>

Functions

 OPT_1GRP_KEY (Boolean, sampling, no_detailed_balance) namespace protocols
 

Function Documentation

OPT_1GRP_KEY ( Boolean  ,
sampling  ,
no_detailed_balance   
)

References core::pose::Pose::add_constraint(), protocols::hybridization::add_constraints(), core::scoring::constraints::add_constraints_from_cmdline(), core::conformation::Residue::atom_index(), core::scoring::atom_pair_constraint, protocols::loops::Loops::begin(), core::scoring::CA_rmsd(), basic::CANONICALMOVER_WRITE_TO_FILE, utility::file::create_directory_recursive(), constraints::cst_file, protocols::jd2::JobDistributor::current_job(), protocols::jd2::JobDistributor::current_job_id(), protocols::jd2::current_output_name(), protocols::loops::Loops::end(), F, core::io::silent::SilentStruct::fill_struct(), core::io::silent::SilentStructFactory::get_instance(), protocols::jd2::JobDistributor::get_instance(), core::io::silent::SilentStructFactory::get_silent_struct(), core::io::silent::SilentStructFactory::get_silent_struct_out(), protocols::init::init(), protocols::jd2::JobDistributor::job_outputter(), jobname, protocols::canonical_sampling::jobname_dirhash(), mc::known_structures, length, basic::options::OptionKeys::loops::loop_file, loops, mod(), basic::MPICANONICALSAMPLING, utility::file::PathName::name(), NEW_OPT, ntrials, core::pose::Pose::omega(), omega, OPT, basic::options::option, option, protocols::evaluation::options_registered_, protocols::moves::CanonicalSamplingMover::options_registered_, output_only_cluster_transitions, basic::options::OptionKeys::out::path::path, out::path::path, core::pose::Pose::pdb_info(), periodic_range(), core::pose::Pose::phi(), PROF_START, PROF_STOP, core::pose::Pose::psi(), protocols::evaluation::register_options(), core::pose::Pose::remove_constraints(), core::pose::Pose::residue(), runtime_assert, score_only, core::io::silent::SilentFileData::set_filename(), protocols::medal::setup_constraints(), ss, temperature, core::pose::Pose::total_residue(), tr, user, utility_exit_with_message, width, and core::conformation::Residue::xyz().