Rosetta Protocols  2014.35
Public Member Functions | Private Attributes | Static Private Attributes | List of all members
protocols::denovo_design::filters::ExposedHydrophobicsFilter Class Reference

#include <ExposedHydrophobicsFilter.hh>

Public Member Functions

 ExposedHydrophobicsFilter ()
 Initialize ExposedHydrophobicsFilter. More...
 
virtual ~ExposedHydrophobicsFilter ()
 virtual constructor to allow derivation More...
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 Parses the ExposedHydrophobicsFilter tags. More...
 
virtual std::string get_name () const
 Return the name of this mover. More...
 
virtual
protocols::filters::FilterOP 
clone () const
 return a fresh instance of this class in an owning pointer More...
 
virtual bool apply (core::pose::Pose const &pose) const
 Apply the ExposedHydrophobicsFilter. Overloaded apply function from filter base class. More...
 
protocols::filters::FilterOP fresh_instance () const
 
void report (std::ostream &out, core::pose::Pose const &pose) const
 
core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
core::Real compute (core::pose::Pose const &pose) const
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 
virtual std::string name () const
 

Private Attributes

core::Real threshold_
 If total calculated filter score is <= theshold_, the filter passes, otherwise it fails. More...
 
core::Real sasa_cutoff_
 If a residue has sasa <= sasa_cutoff_, it is considered buried and ignored. More...
 

Static Private Attributes

static std::string const hydrophobic_residues_ = "MLIVFAWY"
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Constructor & Destructor Documentation

protocols::denovo_design::filters::ExposedHydrophobicsFilter::ExposedHydrophobicsFilter ( )
protocols::denovo_design::filters::ExposedHydrophobicsFilter::~ExposedHydrophobicsFilter ( )
virtual

virtual constructor to allow derivation

destructor - this class has no dynamic allocation, so / nothing needs to be cleaned. C++ will take care of that for us.

Member Function Documentation

bool protocols::denovo_design::filters::ExposedHydrophobicsFilter::apply ( core::pose::Pose const &  pose) const
virtual

Apply the ExposedHydrophobicsFilter. Overloaded apply function from filter base class.

Does the ExposedHydrophobics Filtering.

Implements protocols::filters::Filter.

References compute(), and threshold_.

protocols::filters::FilterOP protocols::denovo_design::filters::ExposedHydrophobicsFilter::clone ( ) const
virtual

return a fresh instance of this class in an owning pointer

Return a copy of ourselves.

Implements protocols::filters::Filter.

References ExposedHydrophobicsFilter().

core::Real protocols::denovo_design::filters::ExposedHydrophobicsFilter::compute ( core::pose::Pose const &  pose) const
protocols::filters::FilterOP protocols::denovo_design::filters::ExposedHydrophobicsFilter::fresh_instance ( ) const
virtual
std::string protocols::denovo_design::filters::ExposedHydrophobicsFilter::get_name ( ) const
virtual

Return the name of this mover.

void protocols::denovo_design::filters::ExposedHydrophobicsFilter::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap data,
protocols::filters::Filters_map const &  ,
protocols::moves::Movers_map const &  ,
core::pose::Pose const &   
)
virtual

Parses the ExposedHydrophobicsFilter tags.

Reimplemented from protocols::filters::Filter.

References sasa_cutoff_, and threshold_.

void protocols::denovo_design::filters::ExposedHydrophobicsFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
virtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::denovo_design::filters::ExposedHydrophobicsFilter::report_sm ( core::pose::Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

std::string const protocols::denovo_design::filters::ExposedHydrophobicsFilter::hydrophobic_residues_ = "MLIVFAWY"
staticprivate

Referenced by compute().

core::Real protocols::denovo_design::filters::ExposedHydrophobicsFilter::sasa_cutoff_
private

If a residue has sasa <= sasa_cutoff_, it is considered buried and ignored.

Referenced by compute(), and parse_my_tag().

core::Real protocols::denovo_design::filters::ExposedHydrophobicsFilter::threshold_
private

If total calculated filter score is <= theshold_, the filter passes, otherwise it fails.

Referenced by apply(), and parse_my_tag().


The documentation for this class was generated from the following files: