protocols::fldsgn::topology::SheetFoldTypeManager Class Reference

#include <SheetFoldTypeManager.hh>

Public Types
typedef std::string	String

Public Member Functions
	SheetFoldTypeManager ()
SheetFoldType	foldtype_from_name (std::string const &name)
	give a string name of SheetFoldType and return its enum type More...
std::string	name_from_foldtype (SheetFoldType score_type)
	give a SheetFoldType and return its string name More...
bool	is_foldtype (std::string const &name)
	check whether the string name of strand pairings is in SheetFoldType or not More...
SheetFoldType	foldtype_from_spairs (std::string const &spairs)
	give a string of strand_pairings and return its enum type More...
std::string	spairs_from_foldtype (SheetFoldType foldtype)
	give a SheetFoldType and return its string of strand_pairings More...
bool	is_sparis_foldtype (std::string const &spairs)
	check whether the string spairs of strand_pairings is in SheetFoldType or not More...

Private Member Functions
void	initialize ()
void	setup_foldtype_names ()
	initialize the SheetFoldType name vector and map More...
void	setup_foldtype_strand_pairings ()
	initialize the map of strand pairings and SheetFoldType More...

Private Attributes
bool	initialized_
std::map< String, SheetFoldType >	name2foldtype_
utility::vector1< String >	foldtype2name_
std::map< String, SheetFoldType >	spairs2foldtype_
utility::vector1< String >	foldtype2spairs_

Member Typedef Documentation

typedef std::string protocols::fldsgn::topology::SheetFoldTypeManager::String

Constructor & Destructor Documentation

protocols::fldsgn::topology::SheetFoldTypeManager::SheetFoldTypeManager

(

)

References initialize().

Member Function Documentation

SheetFoldType protocols::fldsgn::topology::SheetFoldTypeManager::foldtype_from_name

(

std::string const &

name

)

give a string name of SheetFoldType and return its enum type

References initialize(), initialized_, name2foldtype_, and utility_exit_with_message.

SheetFoldType protocols::fldsgn::topology::SheetFoldTypeManager::foldtype_from_spairs

(

std::string const &

spairs

)

give a string of strand_pairings and return its enum type

References initialize(), initialized_, spairs2foldtype_, and protocols::fldsgn::topology::UNKNOWN.

void protocols::fldsgn::topology::SheetFoldTypeManager::initialize ( )

private

References initialized_, setup_foldtype_names(), and setup_foldtype_strand_pairings().

Referenced by foldtype_from_name(), foldtype_from_spairs(), is_foldtype(), is_sparis_foldtype(), name_from_foldtype(), SheetFoldTypeManager(), and spairs_from_foldtype().

bool protocols::fldsgn::topology::SheetFoldTypeManager::is_foldtype

(

std::string const &

name

)

check whether the string name of strand pairings is in SheetFoldType or not

References initialize(), initialized_, and name2foldtype_.

bool protocols::fldsgn::topology::SheetFoldTypeManager::is_sparis_foldtype

(

std::string const &

spairs

)

check whether the string spairs of strand_pairings is in SheetFoldType or not

References initialize(), initialized_, and spairs2foldtype_.

std::string protocols::fldsgn::topology::SheetFoldTypeManager::name_from_foldtype

(

SheetFoldType

score_type

)

give a SheetFoldType and return its string name

References foldtype2name_, initialize(), and initialized_.

void protocols::fldsgn::topology::SheetFoldTypeManager::setup_foldtype_names ( )

private

initialize the SheetFoldType name vector and map

References protocols::fldsgn::topology::BAB_CFr, protocols::fldsgn::topology::BABx1, protocols::fldsgn::topology::BABx2, protocols::fldsgn::topology::BABx3, protocols::fldsgn::topology::BEFr, protocols::fldsgn::topology::BFr, protocols::fldsgn::topology::CDFr, protocols::fldsgn::topology::CFr, protocols::fldsgn::topology::DFr, protocols::fldsgn::topology::DFr_BAB, protocols::fldsgn::topology::DFr_HPN, protocols::fldsgn::topology::EFr, protocols::fldsgn::topology::Fd_like, protocols::fldsgn::topology::Flavodoxin, foldtype2name_, protocols::fldsgn::topology::HPN_CFr, protocols::fldsgn::topology::n_fold_types, name2foldtype_, protocols::fldsgn::topology::NO_STRANDS, protocols::fldsgn::topology::PG_like, protocols::fldsgn::topology::Ploop2x3, protocols::fldsgn::topology::Ploop3x3, protocols::fldsgn::topology::RFd_like, protocols::fldsgn::topology::RNAseH, protocols::fldsgn::topology::RosI, protocols::fldsgn::topology::RosO, protocols::fldsgn::topology::Rsmn2x2, protocols::fldsgn::topology::Rsmn3x3, protocols::fldsgn::topology::Rsmn3x3_Half, protocols::fldsgn::topology::Thio, protocols::fldsgn::topology::Thioredoxin, protocols::fldsgn::topology::Top7, protocols::fldsgn::topology::UNFOLD, and protocols::fldsgn::topology::UNKNOWN.

Referenced by initialize().

void protocols::fldsgn::topology::SheetFoldTypeManager::setup_foldtype_strand_pairings ( )

private

initialize the map of strand pairings and SheetFoldType

References protocols::fldsgn::topology::BAB_CFr, protocols::fldsgn::topology::BABx1, protocols::fldsgn::topology::BABx2, protocols::fldsgn::topology::BABx3, protocols::fldsgn::topology::BEFr, protocols::fldsgn::topology::BFr, protocols::fldsgn::topology::CDFr, protocols::fldsgn::topology::CFr, protocols::fldsgn::topology::DFr, protocols::fldsgn::topology::DFr_BAB, protocols::fldsgn::topology::DFr_HPN, protocols::fldsgn::topology::EFr, protocols::fldsgn::topology::Fd_like, protocols::fldsgn::topology::Flavodoxin, foldtype2spairs_, protocols::fldsgn::topology::HPN_CFr, protocols::fldsgn::topology::n_fold_types, protocols::fldsgn::topology::NO_STRANDS, protocols::fldsgn::topology::PG_like, protocols::fldsgn::topology::Ploop2x3, protocols::fldsgn::topology::Ploop3x3, protocols::fldsgn::topology::RFd_like, protocols::fldsgn::topology::RNAseH, protocols::fldsgn::topology::RosI, protocols::fldsgn::topology::RosO, protocols::fldsgn::topology::Rsmn2x2, protocols::fldsgn::topology::Rsmn3x3, protocols::fldsgn::topology::Rsmn3x3_Half, spairs2foldtype_, protocols::fldsgn::topology::Thio, protocols::fldsgn::topology::Thioredoxin, protocols::fldsgn::topology::Top7, protocols::fldsgn::topology::UNFOLD, and protocols::fldsgn::topology::UNKNOWN.

Referenced by initialize().

std::string protocols::fldsgn::topology::SheetFoldTypeManager::spairs_from_foldtype

(

SheetFoldType

foldtype

)

give a SheetFoldType and return its string of strand_pairings

References foldtype2spairs_, initialize(), and initialized_.

Member Data Documentation

utility::vector1< String > protocols::fldsgn::topology::SheetFoldTypeManager::foldtype2name_

private

Referenced by name_from_foldtype(), and setup_foldtype_names().

utility::vector1< String > protocols::fldsgn::topology::SheetFoldTypeManager::foldtype2spairs_

private

Referenced by setup_foldtype_strand_pairings(), and spairs_from_foldtype().

bool protocols::fldsgn::topology::SheetFoldTypeManager::initialized_

private

Referenced by foldtype_from_name(), foldtype_from_spairs(), initialize(), is_foldtype(), is_sparis_foldtype(), name_from_foldtype(), and spairs_from_foldtype().

std::map< String, SheetFoldType > protocols::fldsgn::topology::SheetFoldTypeManager::name2foldtype_

private

Referenced by foldtype_from_name(), is_foldtype(), and setup_foldtype_names().

std::map< String, SheetFoldType > protocols::fldsgn::topology::SheetFoldTypeManager::spairs2foldtype_

private

Referenced by foldtype_from_spairs(), is_sparis_foldtype(), and setup_foldtype_strand_pairings().

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The documentation for this class was generated from the following files:

• src/protocols/fldsgn/topology/SheetFoldTypeManager.hh
• src/protocols/fldsgn/topology/SheetFoldTypeManager.cc