#include <ClashWithTargetFilter.hh>

Public Member Functions
	ClashWithTargetFilter ()

bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

protocols::filters::FilterOP	clone () const

protocols::filters::FilterOP	fresh_instance () const

void	report (std::ostream &out, core::pose::Pose const &pose) const

core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...

core::Size	compute (core::pose::Pose const &pose) const

virtual	~ClashWithTargetFilter ()

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

virtual std::string	name () const

Private Attributes
std::string	align_to_pdbname_

std::string	context_pdbname_

core::Size	clash_score_cutoff_

std::string	clash_residues_

core::Size	ref_start_

core::Size	ref_end_

core::Size	pose_start_

core::Size	pose_end_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::ClashWithTargetFilter::ClashWithTargetFilter ( )

References filters.

Referenced by clone(), protocols::protein_interface_design::filters::ClashWithTargetFilterCreator::create_filter(), and fresh_instance().

protocols::protein_interface_design::filters::ClashWithTargetFilter::~ClashWithTargetFilter ( )

virtual

Member Function Documentation

bool protocols::protein_interface_design::filters::ClashWithTargetFilter::apply ( core::pose::Pose const & pose ) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References clash_score_cutoff_, compute(), and protocols::protein_interface_design::filters::TR.

protocols::filters::FilterOP protocols::protein_interface_design::filters::ClashWithTargetFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

References ClashWithTargetFilter().

core::Size protocols::protein_interface_design::filters::ClashWithTargetFilter::compute ( core::pose::Pose const & pose ) const

References align_to_pdbname_, protocols::protein_interface_design::movers::BuildAlaPose::apply(), clash_residues_, clash_score_cutoff_, context_pdbname_, core::scoring::ScoreFunctionFactory::create_score_function(), ddg, core::scoring::fa_atr, core::scoring::fa_rep, pose_end_, core::import_pose::pose_from_pdb(), pose_start_, ref_end_, ref_start_, and protocols::filters::Filter::score().

Referenced by apply(), report(), and report_sm().

protocols::filters::FilterOP protocols::protein_interface_design::filters::ClashWithTargetFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References ClashWithTargetFilter().

void protocols::protein_interface_design::filters::ClashWithTargetFilter::parse_my_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	,
		protocols::filters::Filters_map const &	,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &
	)

virtual

Reimplemented from protocols::filters::Filter.

References align_to_pdbname_, clash_residues_, clash_score_cutoff_, context_pdbname_, pose_end_, pose_start_, ref_end_, ref_start_, runtime_assert, and protocols::protein_interface_design::filters::TR.

void protocols::protein_interface_design::filters::ClashWithTargetFilter::report	(	std::ostream &	out,
		core::pose::Pose const &	pose
	)		const

virtual

Reimplemented from protocols::filters::Filter.

References clash_score_cutoff_, and compute().

core::Real protocols::protein_interface_design::filters::ClashWithTargetFilter::report_sm ( core::pose::Pose const & ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

std::string protocols::protein_interface_design::filters::ClashWithTargetFilter::align_to_pdbname_

private

Referenced by compute(), and parse_my_tag().

std::string protocols::protein_interface_design::filters::ClashWithTargetFilter::clash_residues_

private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::ClashWithTargetFilter::clash_score_cutoff_

private

Referenced by apply(), compute(), parse_my_tag(), and report().

std::string protocols::protein_interface_design::filters::ClashWithTargetFilter::context_pdbname_

private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::ClashWithTargetFilter::pose_end_

private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::ClashWithTargetFilter::pose_start_

private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::ClashWithTargetFilter::ref_end_

private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::ClashWithTargetFilter::ref_start_

private

Referenced by compute(), and parse_my_tag().

The documentation for this class was generated from the following files:

src/protocols/protein_interface_design/filters/ClashWithTargetFilter.hh
src/protocols/protein_interface_design/filters/ClashWithTargetFilter.cc

Public Member Functions

Private Attributes

Additional Inherited Members

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation