Rosetta Protocols  2014.35
Public Member Functions | Private Attributes | List of all members
protocols::protein_interface_design::filters::ClashWithTargetFilter Class Reference

#include <ClashWithTargetFilter.hh>

Public Member Functions

 ClashWithTargetFilter ()
 
bool apply (core::pose::Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
 
protocols::filters::FilterOP clone () const
 
protocols::filters::FilterOP fresh_instance () const
 
void report (std::ostream &out, core::pose::Pose const &pose) const
 
core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
core::Size compute (core::pose::Pose const &pose) const
 
virtual ~ClashWithTargetFilter ()
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 
virtual std::string name () const
 

Private Attributes

std::string align_to_pdbname_
 
std::string context_pdbname_
 
core::Size clash_score_cutoff_
 
std::string clash_residues_
 
core::Size ref_start_
 
core::Size ref_end_
 
core::Size pose_start_
 
core::Size pose_end_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::ClashWithTargetFilter::ClashWithTargetFilter ( )
protocols::protein_interface_design::filters::ClashWithTargetFilter::~ClashWithTargetFilter ( )
virtual

Member Function Documentation

bool protocols::protein_interface_design::filters::ClashWithTargetFilter::apply ( core::pose::Pose const &  pose) const
virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References clash_score_cutoff_, compute(), and protocols::protein_interface_design::filters::TR.

protocols::filters::FilterOP protocols::protein_interface_design::filters::ClashWithTargetFilter::clone ( ) const
virtual
core::Size protocols::protein_interface_design::filters::ClashWithTargetFilter::compute ( core::pose::Pose const &  pose) const
protocols::filters::FilterOP protocols::protein_interface_design::filters::ClashWithTargetFilter::fresh_instance ( ) const
inlinevirtual
void protocols::protein_interface_design::filters::ClashWithTargetFilter::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap ,
protocols::filters::Filters_map const &  ,
protocols::moves::Movers_map const &  ,
core::pose::Pose const &   
)
virtual
void protocols::protein_interface_design::filters::ClashWithTargetFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
virtual

Reimplemented from protocols::filters::Filter.

References clash_score_cutoff_, and compute().

core::Real protocols::protein_interface_design::filters::ClashWithTargetFilter::report_sm ( core::pose::Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

std::string protocols::protein_interface_design::filters::ClashWithTargetFilter::align_to_pdbname_
private

Referenced by compute(), and parse_my_tag().

std::string protocols::protein_interface_design::filters::ClashWithTargetFilter::clash_residues_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::ClashWithTargetFilter::clash_score_cutoff_
private

Referenced by apply(), compute(), parse_my_tag(), and report().

std::string protocols::protein_interface_design::filters::ClashWithTargetFilter::context_pdbname_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::ClashWithTargetFilter::pose_end_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::ClashWithTargetFilter::pose_start_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::ClashWithTargetFilter::ref_end_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::ClashWithTargetFilter::ref_start_
private

Referenced by compute(), and parse_my_tag().


The documentation for this class was generated from the following files: