a fragment candidate
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#include <ProfileScoreL1.hh>
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| ProfileScoreL1 (Size, Real, bool, sequence::SequenceProfileOP, utility::vector1< Size > &, Size) |
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| ~ProfileScoreL1 () |
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void | do_caching_simple (VallChunkOP) |
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void | do_caching (VallChunkOP) |
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void | clean_up () |
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bool | score (FragmentCandidateOP, FragmentScoreMapOP) |
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bool | cached_score (FragmentCandidateOP, FragmentScoreMapOP) |
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| CachingScoringMethod (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name) |
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| FragmentScoringMethod (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name) |
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std::string & | get_score_name () |
| Returns a name of this scoring method. More...
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Size | get_id () |
| Returns an integer index assigned to this scoring method by a scoring manager. More...
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void | set_id (Size id) |
| Sets a new integer index for this scoring method. More...
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Size | get_priority () |
| Returns a priority of this scoring method. More...
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Real | get_min_allowed_score () |
| Returns the lowest acceptable score value for this scoring method. More...
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bool | get_use_lowest () |
| Returns the boolean choice on using the above lowest acceptable score value. More...
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void | set_min_allowed_score (Real lowest_acceptable_value) |
| Sets a new value of the lowest acceptable score. More...
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protocols::frag_picker::scores::ProfileScoreL1::~ProfileScoreL1 |
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void protocols::frag_picker::scores::ProfileScoreL1::clean_up |
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inlinevirtual |
void protocols::frag_picker::scores::ProfileScoreL1::clear |
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private |
void protocols::frag_picker::scores::ProfileScoreL1::do_caching |
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VallChunkOP |
chunk | ) |
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virtual |
void protocols::frag_picker::scores::ProfileScoreL1::do_caching_simple |
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VallChunkOP |
chunk | ) |
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std::string protocols::frag_picker::scores::ProfileScoreL1::cached_scores_id_ |
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private |
Matrix protocols::frag_picker::scores::ProfileScoreL1::scores_ |
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protected |
The documentation for this class was generated from the following files: