protocols::protein_interface_design::filters::SSamountFilter Class Reference

#include <SSamountFilter.hh>

Public Member Functions
	SSamountFilter ()
	SSamountFilter (core::Real const upper_threshold, core::Real const lower_threshold, core::Size target_chain, bool b_target_chain, bool b_discard_lonely_SS)
bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...
protocols::filters::FilterOP	clone () const
protocols::filters::FilterOP	fresh_instance () const
void	report (std::ostream &out, core::pose::Pose const &pose) const
core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...
core::Real	compute (core::pose::Pose const &pose) const
virtual	~SSamountFilter ()
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data_map, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &reference_pose)
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
virtual std::string	name () const

Private Attributes
core::Real	upper_threshold_
core::Real	lower_threshold_
core::Size	target_chain_
bool	b_target_chain_
bool	b_discard_lonely_SS_
core::pose::PoseOP	reference_pose_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::SSamountFilter::SSamountFilter

(

)

References filters.

Referenced by clone(), and fresh_instance().

protocols::protein_interface_design::filters::SSamountFilter::SSamountFilter	(	core::Real const	upper_threshold,
		core::Real const	lower_threshold,
		core::Size	target_chain,
		bool	b_target_chain,
		bool	b_discard_lonely_SS
	)

References b_discard_lonely_SS_, b_target_chain_, filters, lower_threshold_, target_chain_, and upper_threshold_.

protocols::protein_interface_design::filters::SSamountFilter::~SSamountFilter ( )

virtual

Member Function Documentation

bool protocols::protein_interface_design::filters::SSamountFilter::apply ( core::pose::Pose const &  pose ) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), lower_threshold_, protocols::protein_interface_design::filters::TR, and upper_threshold_.

protocols::filters::FilterOP protocols::protein_interface_design::filters::SSamountFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

References SSamountFilter().

core::Real protocols::protein_interface_design::filters::SSamountFilter::compute

(

core::pose::Pose const &

pose

)

const

References b_discard_lonely_SS_, b_target_chain_, core::pose::Pose::conformation(), core::scoring::dssp::Dssp::get_dssp_secstruct(), core::pose::Pose::n_residue(), core::conformation::Conformation::num_chains(), core::pose::Pose::split_by_chain(), target_chain_, protocols::protein_interface_design::filters::TR, and utility_exit_with_message.

Referenced by apply(), report(), and report_sm().

protocols::filters::FilterOP protocols::protein_interface_design::filters::SSamountFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References SSamountFilter().

void protocols::protein_interface_design::filters::SSamountFilter::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  data_map, protocols::filters::Filters_map const &  , protocols::moves::Movers_map const &  , core::pose::Pose const &  reference_pose  )

virtual

Reimplemented from protocols::filters::Filter.

References b_discard_lonely_SS_, b_target_chain_, lower_threshold_, core::pose::Pose::n_residue(), reference_pose_, protocols::rosetta_scripts::saved_reference_pose(), target_chain_, protocols::protein_interface_design::filters::TR, upper_threshold_, and utility_exit_with_message.

void protocols::protein_interface_design::filters::SSamountFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

virtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::protein_interface_design::filters::SSamountFilter::report_sm ( core::pose::Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

bool protocols::protein_interface_design::filters::SSamountFilter::b_discard_lonely_SS_

private

Referenced by compute(), parse_my_tag(), and SSamountFilter().

bool protocols::protein_interface_design::filters::SSamountFilter::b_target_chain_

private

Referenced by compute(), parse_my_tag(), and SSamountFilter().

core::Real protocols::protein_interface_design::filters::SSamountFilter::lower_threshold_

private

Referenced by apply(), parse_my_tag(), and SSamountFilter().

core::pose::PoseOP protocols::protein_interface_design::filters::SSamountFilter::reference_pose_

private

Referenced by parse_my_tag().

core::Size protocols::protein_interface_design::filters::SSamountFilter::target_chain_

private

Referenced by compute(), parse_my_tag(), and SSamountFilter().

core::Real protocols::protein_interface_design::filters::SSamountFilter::upper_threshold_

private

Referenced by apply(), parse_my_tag(), and SSamountFilter().

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The documentation for this class was generated from the following files:

• src/protocols/protein_interface_design/filters/SSamountFilter.hh
• src/protocols/protein_interface_design/filters/SSamountFilter.cc