Rosetta Protocols  2014.35
Namespaces | Functions
util.hh File Reference
#include <protocols/moves/Mover.hh>
#include <core/types.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/kinematics/MoveMap.fwd.hh>
#include <protocols/rbsegment_relax/RBSegment.fwd.hh>
#include <protocols/rbsegment_relax/RBSegment.hh>
#include <map>
#include <numeric/xyzVector.hh>
#include <utility/pointer/ReferenceCount.hh>
#include <numeric/conversions.hh>
#include <numeric/xyzMatrix.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::rbsegment_relax
 

Functions

void protocols::rbsegment_relax::set_rb_constraints (core::pose::Pose &pose, core::pose::Pose const &cst_pose, utility::vector1< protocols::rbsegment_relax::RBSegment > const &rbsegs, core::id::SequenceMapping const &resmap, core::Real cst_width, core::Real cst_stdev, core::Size cst_seqwidth)
 set up constraints from RB segs currently uses bounded constraints on each CA ... make CST type flag-selectable???? More...
 
void protocols::rbsegment_relax::set_constraints (core::pose::Pose &pose, core::pose::Pose const &cst_pose, core::Real cst_width, core::Real cst_stdev, core::Size cst_seqwidth)
 set up constraints on complete pose (not just RB segments) currently uses bounded constraints ... make CST type flag-selectable???? More...
 
void protocols::rbsegment_relax::setup_star_topology (core::pose::Pose &pose)
 setup star-topology fold tree More...
 
void protocols::rbsegment_relax::setup_disconnected (core::pose::Pose &pose)
 build a pose where every residue is connected by jumps to vrt More...
 
void protocols::rbsegment_relax::setup_pose_from_rbsegs (utility::vector1< protocols::rbsegment_relax::RBSegment > const &rbsegs, core::pose::Pose const &pose_in, core::pose::Pose &pose_out, core::id::SequenceMapping &resmap, core::kinematics::MoveMap &mm, bool fix_ligand)
 Helper function to set up a loop-removed pose. More...
 
void protocols::rbsegment_relax::guess_rbsegs_from_pose (core::pose::Pose const &pose, utility::vector1< RBSegment > &rigid_segs, utility::vector1< RBSegment > &rb_chunks, protocols::loops::Loops &loops)
 use DSSP and simple rules to guess the asignment of rigid-body segments More...
 
utility::vector1< core::Sizeprotocols::rbsegment_relax::setup_pose_rbsegs_keep_loops (core::pose::Pose &pose, utility::vector1< protocols::rbsegment_relax::RBSegment > const &rbsegs, loops::Loops const &loops, core::kinematics::MoveMapOP mm)
 Helper function to set up a pose; unlike alt version keep loops (use cutpoint variants) unlike version in loops_main, this uses RBSegment structure to build multi-level topology returns jump residues. More...
 
void protocols::rbsegment_relax::restore_pose_from_rbsegs (utility::vector1< protocols::rbsegment_relax::RBSegment > const &rbsegs, core::pose::Pose const &pose_in, core::pose::Pose &pose_out)
 Helper function to restore a fully-connected pose. More...
 
void protocols::rbsegment_relax::remap_rb_segments (utility::vector1< RBSegment > const &rbsegs, utility::vector1< RBSegment > &rbsegs_remap, core::id::SequenceMapping const &resmap)
 res mapping to rbsegments More...
 

Detailed Description

Author
Frank DiMaio
Srivatsan Raman