Rosetta Protocols  2014.35
Public Member Functions | Private Attributes | List of all members
protocols::simple_filters::MultipleSigmoids Class Reference

simply takes a list of pdbs and creates relative pose then extract sigmoids and call operator (product) More...

#include <MultipleSigmoidsFilter.hh>

Public Member Functions

 MultipleSigmoids ()
 
virtual ~MultipleSigmoids ()
 
filters::FilterOP clone () const
 
filters::FilterOP fresh_instance () const
 
virtual bool apply (core::pose::Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
 
virtual void report (std::ostream &out, core::pose::Pose const &pose) const
 
virtual core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, filters::Filters_map const &filters, moves::Movers_map const &, core::pose::Pose const &)
 
core::Real compute (core::pose::Pose const &pose) const
 
core::Real threshold () const
 
void threshold (core::Real const t)
 
OperatorOP operator_filter () const
 
void operator_filter (OperatorOP opt)
 
SigmoidOP sigmoid_filter () const
 
RelativePoseFilterOP relative_pose_filter () const
 
void relative_pose_filter (RelativePoseFilterOP rpose)
 
void reset_baseline (core::pose::Pose const &pose, bool const attempt_read_from_checkpoint)
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 
virtual std::string name () const
 

Private Attributes

std::string file_names_
 allows within-trajectory resetting of the baseline. Notice this is nonconst, so can't be called from apply. attempt_read_from_checkpoint should be true for MC trials > 1, but false otherwise More...
 
core::Real threshold_
 
RelativePoseFilterOP r_pose_
 
SigmoidOP sig_
 
OperatorOP operatorF_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Detailed Description

simply takes a list of pdbs and creates relative pose then extract sigmoids and call operator (product)

Constructor & Destructor Documentation

protocols::simple_filters::MultipleSigmoids::MultipleSigmoids ( )

References filters.

Referenced by clone(), and fresh_instance().

protocols::simple_filters::MultipleSigmoids::~MultipleSigmoids ( )
virtual

Member Function Documentation

bool protocols::simple_filters::MultipleSigmoids::apply ( core::pose::Pose const &  pose) const
virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), and threshold().

protocols::filters::FilterOP protocols::simple_filters::MultipleSigmoids::clone ( ) const
virtual
core::Real protocols::simple_filters::MultipleSigmoids::compute ( core::pose::Pose const &  pose) const

References operatorF_, and protocols::simple_filters::TR.

Referenced by apply(), report(), and report_sm().

protocols::filters::FilterOP protocols::simple_filters::MultipleSigmoids::fresh_instance ( ) const
virtual
OperatorOP protocols::simple_filters::MultipleSigmoids::operator_filter ( ) const

References operatorF_.

void protocols::simple_filters::MultipleSigmoids::operator_filter ( OperatorOP  opt)

References operatorF_.

void protocols::simple_filters::MultipleSigmoids::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap data,
filters::Filters_map const &  filters,
moves::Movers_map const &  movers,
core::pose::Pose const &  pose 
)
virtual
RelativePoseFilterOP protocols::simple_filters::MultipleSigmoids::relative_pose_filter ( ) const

References r_pose_.

void protocols::simple_filters::MultipleSigmoids::relative_pose_filter ( RelativePoseFilterOP  rpose)

References r_pose_.

void protocols::simple_filters::MultipleSigmoids::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
virtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::simple_filters::MultipleSigmoids::report_sm ( core::pose::Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute(), and operatorF_.

void protocols::simple_filters::MultipleSigmoids::reset_baseline ( core::pose::Pose const &  pose,
bool const  attempt_read_from_checkpoint 
)
SigmoidOP protocols::simple_filters::MultipleSigmoids::sigmoid_filter ( ) const

References sig_.

core::Real protocols::simple_filters::MultipleSigmoids::threshold ( ) const
inline

References threshold_.

Referenced by apply(), and parse_my_tag().

void protocols::simple_filters::MultipleSigmoids::threshold ( core::Real const  t)
inline

References threshold_.

Member Data Documentation

std::string protocols::simple_filters::MultipleSigmoids::file_names_
private

allows within-trajectory resetting of the baseline. Notice this is nonconst, so can't be called from apply. attempt_read_from_checkpoint should be true for MC trials > 1, but false otherwise

OperatorOP protocols::simple_filters::MultipleSigmoids::operatorF_
private
RelativePoseFilterOP protocols::simple_filters::MultipleSigmoids::r_pose_
private
SigmoidOP protocols::simple_filters::MultipleSigmoids::sig_
private

Referenced by parse_my_tag(), and sigmoid_filter().

core::Real protocols::simple_filters::MultipleSigmoids::threshold_
private

Referenced by threshold().


The documentation for this class was generated from the following files: