Rosetta Protocols  2014.35
Public Member Functions | Private Attributes | List of all members
protocols::docking::DockingHighResFilter Class Reference

High-resolution (all-atom) filter for docking. Checks (1) total_score beats the cutoff given (2) interface_score must be negative. More...

#include <DockFilters.hh>

Public Member Functions

 DockingHighResFilter ()
 DockingHighResFilter (const DockingHighResFilter &init)
 ~DockingHighResFilter ()
void set_score_margin (core::Real new_score_margin)
void set_score_cutoff (core::Real new_cutoff)
void set_moveable_jumps (DockJumps const &movable_jumps)
void set_scorefunction (core::scoring::ScoreFunctionOP const scorefunction)
bool apply (core::pose::Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
protocols::filters::FilterOP clone () const
protocols::filters::FilterOP fresh_instance () const
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 Filter (std::string const &)
 Filter (Filter const &)
virtual ~Filter ()
virtual void report (std::ostream &, core::pose::Pose const &) const
virtual core::Real report_sm (core::pose::Pose const &) const
 used to report filter internals through a score or silent file More...
virtual std::string get_type () const
std::string get_user_defined_name () const
void set_user_defined_name (std::string const &name)
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void parse_my_tag (utility::tag::TagCOP, basic::datacache::DataMap &, Filters_map const &, moves::Movers_map const &, core::pose::Pose const &)
virtual void apply (core::io::serialization::PipeMap &pmap)
virtual void score (core::io::serialization::PipeMap &pmap)
virtual core::Real score (core::pose::Pose &pose)
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
virtual std::string name () const

Private Attributes

DockJumps movable_jumps_
core::Real score_margin_
core::scoring::ScoreFunctionOP scorefunction_
 extra margin for passing filters for early in protocol More...
protocols::simple_filters::ScoreCutoffFilterOP scorefilter_
 ScoreFunction for evaluating interface_score //defaults to docking scorefxn. More...

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_

Detailed Description

High-resolution (all-atom) filter for docking. Checks (1) total_score beats the cutoff given (2) interface_score must be negative.

/// ++ had: 1-score filter 2-fa_rep filter 3-interfaceE filter 4-chainbreak filter TTD: add these other filters

Constructor & Destructor Documentation

protocols::docking::DockingHighResFilter::DockingHighResFilter ( )
protocols::docking::DockingHighResFilter::DockingHighResFilter ( const DockingHighResFilter init)
protocols::docking::DockingHighResFilter::~DockingHighResFilter ( )

Member Function Documentation

bool protocols::docking::DockingHighResFilter::apply ( core::pose::Pose const &  pose) const
protocols::filters::FilterOP protocols::docking::DockingHighResFilter::clone ( ) const
protocols::filters::FilterOP protocols::docking::DockingHighResFilter::fresh_instance ( ) const
void protocols::docking::DockingHighResFilter::set_moveable_jumps ( DockJumps const &  movable_jumps)

References movable_jumps_.

void protocols::docking::DockingHighResFilter::set_score_cutoff ( core::Real  new_cutoff)
void protocols::docking::DockingHighResFilter::set_score_margin ( core::Real  new_score_margin)
void protocols::docking::DockingHighResFilter::set_scorefunction ( core::scoring::ScoreFunctionOP const  scorefunction)

References scorefunction_.

Member Data Documentation

DockJumps protocols::docking::DockingHighResFilter::movable_jumps_
core::Real protocols::docking::DockingHighResFilter::score_margin_
protocols::simple_filters::ScoreCutoffFilterOP protocols::docking::DockingHighResFilter::scorefilter_

ScoreFunction for evaluating interface_score //defaults to docking scorefxn.

Referenced by apply(), DockingHighResFilter(), set_score_cutoff(), and set_score_margin().

core::scoring::ScoreFunctionOP protocols::docking::DockingHighResFilter::scorefunction_

extra margin for passing filters for early in protocol

Referenced by apply(), DockingHighResFilter(), and set_scorefunction().

The documentation for this class was generated from the following files: