Rosetta Protocols  2014.35
Classes | Namespaces | Variables
NcontactsCalculator.cc File Reference

calculate #atom contacts divided by pose.total_residue() in a given pose More...

#include <protocols/fldsgn/NcontactsCalculator.hh>
#include <protocols/fldsgn/topology/SS_Info2.hh>
#include <protocols/fldsgn/topology/Sheet.hh>
#include <protocols/fldsgn/topology/StrandPairing.hh>
#include <protocols/fldsgn/topology/util.hh>
#include <basic/MetricValue.hh>
#include <core/conformation/Atom.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/Pose.hh>
#include <basic/Tracer.hh>
#include <utility/vector1.hh>
#include <utility/string_util.hh>
#include <cmath>
#include <core/chemical/AtomType.hh>
#include <utility/options/BooleanVectorOption.hh>

Classes

class  protocols::fldsgn::MyAtom
 

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::fldsgn
 

Variables

static basic::Tracer tr ("protocols.fldsgn.NcontactsCalculator")
 

Detailed Description

calculate #atom contacts divided by pose.total_residue() in a given pose

Detailed: If two atom, each of which belongs to different residues, are within a
given distance, condist_( default 6.0A ), the two atoms are defined as contact pair. The residues the atoms belong to are close ( isep_residue_ = 4 ) with each other along sequence, the contact pair is ignored.
Author
Nobuyasu Koga ( nobuy.nosp@m.asu@.nosp@m.uw.ed.nosp@m.u )

Variable Documentation

basic::Tracer tr("protocols.fldsgn.NcontactsCalculator")
static