protocols::kinematic_closure::perturbers::WalkingBondAnglePerturber Class Reference

Resample each backbone bond angle from a gaussian distribution. More...

#include <WalkingBondAnglePerturber.hh>

Public Member Functions
	WalkingBondAnglePerturber (Real magnitude=2.27632)
	Constructor. A magnitude (in degrees) can be specified. More...
std::string	get_name () const
	Return the name of this perturber. More...
void	perturb_subset (Pose const &pose, IndexList const &residues, ClosureProblemOP problem)
	Perturb the given residues. More...
void	perturb_subset_with_balance (Pose const &pose, IndexList const &residues, ClosureProblemOP problem)
	Perturb the given residues such that detailed balance is obeyed. More...
Public Member Functions inherited from protocols::kinematic_closure::perturbers::Perturber
void	perturb (Pose const &pose, ClosureProblemOP problem)
	Perturb all of the non-pivot residues. More...
void	perturb_with_balance (Pose const &pose, ClosureProblemOP problem)
	Perturb all of the non-pivot residues such that detailed balance is obeyed. More...

Private Attributes
Real	magnitude_

Detailed Description

Resample each backbone bond angle from a gaussian distribution.

The parameters for the underlying gaussian distribution were taken from a fit of the bond angle distribution observed in the Top8000 database in 2013. Also note that bond angles (3 atoms) are different than torsion angles (4 atoms).

Constructor & Destructor Documentation

protocols::kinematic_closure::perturbers::WalkingBondAnglePerturber::WalkingBondAnglePerturber

(

Real

magnitude = 2.27632

)

Constructor. A magnitude (in degrees) can be specified.

Member Function Documentation

std::string protocols::kinematic_closure::perturbers::WalkingBondAnglePerturber::get_name ( ) const

inlinevirtual

Return the name of this perturber.

Implements protocols::kinematic_closure::perturbers::Perturber.

void protocols::kinematic_closure::perturbers::WalkingBondAnglePerturber::perturb_subset ( Pose const &  pose, IndexList const &  residues, ClosureProblemOP  problem  )

virtual

Perturb the given residues.

Implements protocols::kinematic_closure::perturbers::Perturber.

References angle, numeric::conversions::DEGREES, DEGREES, numeric::random::gaussian(), gaussian(), magnitude_, and residue.

Referenced by perturb_subset_with_balance().

void protocols::kinematic_closure::perturbers::WalkingBondAnglePerturber::perturb_subset_with_balance ( Pose const &  pose, IndexList const &  residues, ClosureProblemOP  problem  )

virtual

Perturb the given residues such that detailed balance is obeyed.

If not reimplemented, this method will kill rosetta and complain that no balanced implementation of this algorithm exists.

Reimplemented from protocols::kinematic_closure::perturbers::Perturber.

References perturb_subset().

Member Data Documentation

Real protocols::kinematic_closure::perturbers::WalkingBondAnglePerturber::magnitude_

private

Referenced by perturb_subset().

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The documentation for this class was generated from the following files:

• src/protocols/kinematic_closure/perturbers/WalkingBondAnglePerturber.hh
• src/protocols/kinematic_closure/perturbers/WalkingBondAnglePerturber.cc