Rosetta Protocols  2014.35
protocols::optimize_weights::PNatAAOptEPositionData Member List

This is the complete list of members for protocols::optimize_weights::PNatAAOptEPositionData, including all inherited members.

AA typedefprotocols::optimize_weights::PNatAAOptEPositionData
add_rotamer_line_data(PNatAAOptERotamerDataOP rot_in)protocols::optimize_weights::PNatAAOptEPositionDatainline
data()protocols::optimize_weights::PNatAAOptEPositionDatainline
data() const protocols::optimize_weights::PNatAAOptEPositionDatainline
data_protocols::optimize_weights::PNatAAOptEPositionDataprivate
EnergyMap typedefprotocols::optimize_weights::OptEPositionData
get_score(Multivec const &component_weights, Multivec const &vars, Multivec &dE_dvars, Size const num_energy_dofs, int const num_ref_dofs, int const num_total_dofs, EnergyMap const &fixed_terms, ScoreTypes const &score_list, ScoreTypes const &fixed_score_list) const protocols::optimize_weights::PNatAAOptEPositionDatavirtual
memory_use() const protocols::optimize_weights::PNatAAOptEPositionDatavirtual
Multivec typedefprotocols::optimize_weights::OptEPositionData
native_aa() const protocols::optimize_weights::PNatAAOptEPositionDatainline
native_aa_protocols::optimize_weights::PNatAAOptEPositionDataprivate
neighbor_count() const protocols::optimize_weights::PNatAAOptEPositionDatainline
neighbor_count_protocols::optimize_weights::PNatAAOptEPositionDataprivate
OptEPositionData()protocols::optimize_weights::OptEPositionData
PNatAAOptEPositionData()protocols::optimize_weights::PNatAAOptEPositionData
position() const protocols::optimize_weights::PNatAAOptEPositionDatainline
position_protocols::optimize_weights::PNatAAOptEPositionDataprivate
print_score(std::ostream &ostr, Multivec const &component_weights, Multivec const &vars, Multivec &dE_dvars, Size const num_energy_dofs, int const num_ref_dofs, int const num_total_dofs, EnergyMap const &fixed_terms, ScoreTypes const &score_list, ScoreTypes const &fixed_score_list) const protocols::optimize_weights::PNatAAOptEPositionDatavirtual
process_rotamers(Multivec const &vars, Size const num_energy_dofs, EnergyMap const &fixed_terms, ScoreTypes const &score_list, ScoreTypes const &fixed_score_list, Size const aa_range, utility::vector1< Real > const &dummy_set, utility::vector1< Real > &best_energy_by_aa, utility::vector1< utility::vector1< Real > > &unweighted_E_dof, Multivec &ref_deriv_weight) const protocols::optimize_weights::PNatAAOptEPositionDataprotected
range(ScoreTypes const &free_score_list, ScoreTypes const &fixed_score_list, EnergyMap &lower_bound, EnergyMap &upper_bound) const protocols::optimize_weights::PNatAAOptEPositionDatavirtual
read_from_binary_file(std::ifstream &infile)protocols::optimize_weights::PNatAAOptEPositionDatavirtual
read_from_file(std::ifstream &infile)protocols::optimize_weights::PNatAAOptEPositionDatavirtual
Real typedefprotocols::optimize_weights::OptEPositionData
rotamer_data_begin() const protocols::optimize_weights::PNatAAOptEPositionDatainline
rotamer_data_end() const protocols::optimize_weights::PNatAAOptEPositionDatainline
ScoreTypes typedefprotocols::optimize_weights::OptEPositionData
set_native_aa(AA nat_in)protocols::optimize_weights::PNatAAOptEPositionDatainline
set_neighbor_count(Size nb_in)protocols::optimize_weights::PNatAAOptEPositionDatainline
set_position(Size pos_in)protocols::optimize_weights::PNatAAOptEPositionDatainline
Size typedefprotocols::optimize_weights::OptEPositionData
size() const protocols::optimize_weights::PNatAAOptEPositionDatainlinevirtual
tag(std::string const &tag_in)protocols::optimize_weights::OptEPositionData
tag() const protocols::optimize_weights::OptEPositionData
type() const protocols::optimize_weights::PNatAAOptEPositionDatavirtual
update_range(SingleStructureDataCOP structure, ScoreTypes const &free_score_list, ScoreTypes const &fixed_score_list, EnergyMap &lower_bound, EnergyMap &upper_bound) const protocols::optimize_weights::OptEPositionDataprotected
write_to_binary_file(std::ofstream &outfile) const protocols::optimize_weights::PNatAAOptEPositionDatavirtual
write_to_file(std::ofstream &outfile) const protocols::optimize_weights::PNatAAOptEPositionDatavirtual
~OptEPositionData()protocols::optimize_weights::OptEPositionDatavirtual
~PNatAAOptEPositionData()protocols::optimize_weights::PNatAAOptEPositionDatavirtual