| AA typedef | protocols::optimize_weights::PNatAAOptEPositionData | |
| add_rotamer_line_data(PNatAAOptERotamerDataOP rot_in) | protocols::optimize_weights::PNatAAOptEPositionData | inline |
| data() | protocols::optimize_weights::PNatAAOptEPositionData | inline |
| data() const | protocols::optimize_weights::PNatAAOptEPositionData | inline |
| data_ | protocols::optimize_weights::PNatAAOptEPositionData | private |
| EnergyMap typedef | protocols::optimize_weights::OptEPositionData | |
| get_score(Multivec const &component_weights, Multivec const &vars, Multivec &dE_dvars, Size const num_energy_dofs, int const num_ref_dofs, int const num_total_dofs, EnergyMap const &fixed_terms, ScoreTypes const &score_list, ScoreTypes const &fixed_score_list) const | protocols::optimize_weights::PNatAAOptEPositionData | virtual |
| memory_use() const | protocols::optimize_weights::PNatAAOptEPositionData | virtual |
| Multivec typedef | protocols::optimize_weights::OptEPositionData | |
| native_aa() const | protocols::optimize_weights::PNatAAOptEPositionData | inline |
| native_aa_ | protocols::optimize_weights::PNatAAOptEPositionData | private |
| neighbor_count() const | protocols::optimize_weights::PNatAAOptEPositionData | inline |
| neighbor_count_ | protocols::optimize_weights::PNatAAOptEPositionData | private |
| OptEPositionData() | protocols::optimize_weights::OptEPositionData | |
| PNatAAOptEPositionData() | protocols::optimize_weights::PNatAAOptEPositionData | |
| position() const | protocols::optimize_weights::PNatAAOptEPositionData | inline |
| position_ | protocols::optimize_weights::PNatAAOptEPositionData | private |
| print_score(std::ostream &ostr, Multivec const &component_weights, Multivec const &vars, Multivec &dE_dvars, Size const num_energy_dofs, int const num_ref_dofs, int const num_total_dofs, EnergyMap const &fixed_terms, ScoreTypes const &score_list, ScoreTypes const &fixed_score_list) const | protocols::optimize_weights::PNatAAOptEPositionData | virtual |
| process_rotamers(Multivec const &vars, Size const num_energy_dofs, EnergyMap const &fixed_terms, ScoreTypes const &score_list, ScoreTypes const &fixed_score_list, Size const aa_range, utility::vector1< Real > const &dummy_set, utility::vector1< Real > &best_energy_by_aa, utility::vector1< utility::vector1< Real > > &unweighted_E_dof, Multivec &ref_deriv_weight) const | protocols::optimize_weights::PNatAAOptEPositionData | protected |
| range(ScoreTypes const &free_score_list, ScoreTypes const &fixed_score_list, EnergyMap &lower_bound, EnergyMap &upper_bound) const | protocols::optimize_weights::PNatAAOptEPositionData | virtual |
| read_from_binary_file(std::ifstream &infile) | protocols::optimize_weights::PNatAAOptEPositionData | virtual |
| read_from_file(std::ifstream &infile) | protocols::optimize_weights::PNatAAOptEPositionData | virtual |
| Real typedef | protocols::optimize_weights::OptEPositionData | |
| rotamer_data_begin() const | protocols::optimize_weights::PNatAAOptEPositionData | inline |
| rotamer_data_end() const | protocols::optimize_weights::PNatAAOptEPositionData | inline |
| ScoreTypes typedef | protocols::optimize_weights::OptEPositionData | |
| set_native_aa(AA nat_in) | protocols::optimize_weights::PNatAAOptEPositionData | inline |
| set_neighbor_count(Size nb_in) | protocols::optimize_weights::PNatAAOptEPositionData | inline |
| set_position(Size pos_in) | protocols::optimize_weights::PNatAAOptEPositionData | inline |
| Size typedef | protocols::optimize_weights::OptEPositionData | |
| size() const | protocols::optimize_weights::PNatAAOptEPositionData | inlinevirtual |
| tag(std::string const &tag_in) | protocols::optimize_weights::OptEPositionData | |
| tag() const | protocols::optimize_weights::OptEPositionData | |
| type() const | protocols::optimize_weights::PNatAAOptEPositionData | virtual |
| update_range(SingleStructureDataCOP structure, ScoreTypes const &free_score_list, ScoreTypes const &fixed_score_list, EnergyMap &lower_bound, EnergyMap &upper_bound) const | protocols::optimize_weights::OptEPositionData | protected |
| write_to_binary_file(std::ofstream &outfile) const | protocols::optimize_weights::PNatAAOptEPositionData | virtual |
| write_to_file(std::ofstream &outfile) const | protocols::optimize_weights::PNatAAOptEPositionData | virtual |
| ~OptEPositionData() | protocols::optimize_weights::OptEPositionData | virtual |
| ~PNatAAOptEPositionData() | protocols::optimize_weights::PNatAAOptEPositionData | virtual |
1.8.7