apply(core::pose::Pose const &pose) const | protocols::simple_filters::SSMotifFinder | virtual |
protocols::filters::Filter::apply(core::io::serialization::PipeMap &pmap) | protocols::filters::Filter | virtual |
clear() | protocols::filters::Filter | inlinevirtual |
clone() const | protocols::simple_filters::SSMotifFinder | inlinevirtual |
compute_jump(core::pose::Pose const &pose, core::Size const start, core::Size const end) const | protocols::simple_filters::SSMotifFinder | |
filename() const | protocols::simple_filters::SSMotifFinder | inline |
filename(std::string const s) | protocols::simple_filters::SSMotifFinder | inline |
filename_ | protocols::simple_filters::SSMotifFinder | private |
Filter() | protocols::filters::Filter | |
Filter(std::string const &) | protocols::filters::Filter | |
Filter(Filter const &) | protocols::filters::Filter | |
fresh_instance() const | protocols::simple_filters::SSMotifFinder | inlinevirtual |
from_res() const | protocols::simple_filters::SSMotifFinder | inline |
from_res(core::Size const r) | protocols::simple_filters::SSMotifFinder | inline |
from_res_ | protocols::simple_filters::SSMotifFinder | private |
get_type() const | protocols::filters::Filter | inlinevirtual |
get_user_defined_name() const | protocols::filters::Filter | inline |
jump() const | protocols::simple_filters::SSMotifFinder | |
jump_ | protocols::simple_filters::SSMotifFinder | private |
name() const | protocols::filters::Filter | inlinevirtual |
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks) | protocols::filters::Filter | virtual |
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &, filters::Filters_map const &filters, moves::Movers_map const &, core::pose::Pose const &) | protocols::simple_filters::SSMotifFinder | virtual |
pdbname() const | protocols::simple_filters::SSMotifFinder | inline |
pdbname(std::string const s) | protocols::simple_filters::SSMotifFinder | inline |
pdbname_ | protocols::simple_filters::SSMotifFinder | private |
report(std::ostream &out, core::pose::Pose const &pose) const | protocols::simple_filters::SSMotifFinder | virtual |
report_sm(core::pose::Pose const &pose) const | protocols::simple_filters::SSMotifFinder | virtual |
rmsd() const | protocols::simple_filters::SSMotifFinder | inline |
rmsd(core::Real const c) | protocols::simple_filters::SSMotifFinder | inline |
rmsd_ | protocols::simple_filters::SSMotifFinder | private |
score(core::io::serialization::PipeMap &pmap) | protocols::filters::Filter | virtual |
score(core::pose::Pose &pose) | protocols::filters::Filter | virtual |
scorename_ | protocols::filters::Filter | protected |
set_user_defined_name(std::string const &name) | protocols::filters::Filter | inline |
SSMotifFinder() | protocols::simple_filters::SSMotifFinder | |
superimpose_pose_on_template(core::pose::Pose const &, core::pose::Pose &, core::Size const, core::Size const ) const | protocols::simple_filters::SSMotifFinder | private |
template_pose_ | protocols::simple_filters::SSMotifFinder | private |
template_stem1() const | protocols::simple_filters::SSMotifFinder | inline |
template_stem1(core::Size const r) | protocols::simple_filters::SSMotifFinder | inline |
template_stem1_ | protocols::simple_filters::SSMotifFinder | private |
template_stem2() const | protocols::simple_filters::SSMotifFinder | inline |
template_stem2(core::Size const r) | protocols::simple_filters::SSMotifFinder | inline |
template_stem2_ | protocols::simple_filters::SSMotifFinder | private |
to_res() const | protocols::simple_filters::SSMotifFinder | inline |
to_res(core::Size const r) | protocols::simple_filters::SSMotifFinder | inline |
to_res_ | protocols::simple_filters::SSMotifFinder | private |
~Filter() | protocols::filters::Filter | virtual |
~SSMotifFinder() | protocols::simple_filters::SSMotifFinder | virtual |