Rosetta Protocols  2014.35
Namespaces | Functions | Variables
StemFinderFilter.cc File Reference
#include <protocols/simple_filters/StemFinderFilter.hh>
#include <protocols/simple_filters/StemFinderFilterCreator.hh>
#include <utility/tag/Tag.hh>
#include <basic/Tracer.hh>
#include <core/pose/Pose.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/Residue.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <utility/vector1.hh>
#include <string>
#include <boost/foreach.hpp>
#include <utility/string_util.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::simple_filters
 

Functions

std::string protocols::simple_filters::dssp (core::pose::Pose const &pose)
 potentially useful utility functions More...
 
utility::vector1< core::Sizeprotocols::simple_filters::positions_in_secstruct (core::pose::Pose const &pose)
 find helix, sheet positions in dssp More...
 
utility::vector1
< core::pose::PoseOP
protocols::simple_filters::load_poses (utility::vector1< std::string > const filenames)
 load PDBs into a vector More...
 
core::Real protocols::simple_filters::atom_distance (core::pose::Pose const &p1, core::Size const r1, std::string const a1, core::pose::Pose const &p2, core::Size const r2, std::string const a2)
 
core::Real protocols::simple_filters::res_res_min_distance (core::pose::Pose const &p1, core::Size const r1, core::pose::Pose const &p2, core::Size const r2)
 find the minimal atom-atom distance between two residues More...
 

Variables

static basic::Tracer protocols::simple_filters::TR ("protocols.simple_filters.StemFinder")
 

Detailed Description

Author
Ravit Netzer & Sarel Fleishman