Rosetta Protocols  2014.35
protocols::enzdes::BackboneSampler Member List

This is the complete list of members for protocols::enzdes::BackboneSampler, including all inherited members.

apply(Pose &pose)protocols::enzdes::BackboneSamplervirtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
BackboneSampler()protocols::enzdes::BackboneSampler
BackboneSampler(ScoreFunctionCOP scorefxn, core::Size const bb_moves, core::Real const mc_kt)protocols::enzdes::BackboneSampler
bb_interface_cutoff_protocols::ligand_docking::LigandBaseProtocolprotected
bb_moves_protocols::enzdes::BackboneSamplerprivate
choose_desired_centroid(core::pose::Pose const &pose, core::Size jump_id, utility::vector1< core::Vector >)protocols::ligand_docking::LigandBaseProtocolprotected
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::enzdes::BackboneSamplervirtual
create()protocols::moves::Movervirtual
Filters_map typedefprotocols::moves::Mover
find_interface_backbone(core::pose::Pose const &pose, int jump_id, core::Real cutoff_dist, utility::vector1< bool > &is_interface, utility::vector1< bool > &is_around_interface) const protocols::ligand_docking::LigandBaseProtocolprotected
find_interface_rsds(core::pose::Pose const &pose, int jump_id, core::Real padding, ObjexxFCL::FArray1D_bool &is_interface) const protocols::ligand_docking::LigandBaseProtocolprotected
fresh_instance() const protocols::enzdes::BackboneSamplerinlinevirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_ligand_id(core::pose::Pose const &pose) const protocols::ligand_docking::LigandBaseProtocol
get_ligand_id(core::pose::Pose const &pose, core::Size jump_id) const protocols::ligand_docking::LigandBaseProtocol
get_ligand_jump_id(core::pose::Pose const &pose) const protocols::ligand_docking::LigandBaseProtocol
get_name() const protocols::enzdes::BackboneSamplervirtual
get_native_pose() const protocols::moves::Mover
get_non_bb_clashing_rotamers(core::pose::Pose const &pose, core::Size seqpos, core::scoring::ScoreFunctionCOP scofx, utility::vector1< core::conformation::ResidueCOP > &accepted_rotamers) const protocols::ligand_docking::LigandBaseProtocol
get_scorefxn()protocols::ligand_docking::LigandBaseProtocol
get_scorefxn() const protocols::ligand_docking::LigandBaseProtocol
get_type() const protocols::moves::Moverinline
hard_scorefxn_protocols::ligand_docking::LigandBaseProtocolprotected
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
LigandBaseProtocol()protocols::ligand_docking::LigandBaseProtocol
make_movemap(core::pose::Pose const &pose, core::Size jump_id, core::Real sc_padding, bool include_all_rsds, bool include_backbone, bool include_ligands, bool include_water) const protocols::ligand_docking::LigandBaseProtocolprotected
make_packer_task(core::pose::Pose const &pose, ObjexxFCL::FArray1D_bool const &allow_repack, bool ligand_protonation) const protocols::ligand_docking::LigandBaseProtocolprotected
make_packer_task(core::pose::Pose const &pose, int jump_id, core::Real sc_padding, bool include_all_rsds, bool ligand_protonation) const protocols::ligand_docking::LigandBaseProtocolprotected
make_packer_task_ligand_only(core::pose::Pose const &pose, int jump_id, bool ligand_protonation) const protocols::ligand_docking::LigandBaseProtocolprotected
make_tweaked_scorefxn(std::string const &weights_tag, bool estat_exclude_protein, bool estat_upweight, bool hbonds_downweight)protocols::ligand_docking::LigandBaseProtocolprotected
mc_kt_protocols::enzdes::BackboneSamplerprivate
move_ligand_to_desired_centroid(core::pose::Pose &pose, core::Size jump_id, utility::vector1< core::Vector > start_from_pts)protocols::ligand_docking::LigandBaseProtocolprotected
move_ligand_to_desired_centroid(core::pose::Pose &pose, core::Size jump_id, core::Vector desired_centroid)protocols::ligand_docking::LigandBaseProtocolprotected
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
operator=(Mover const &other)protocols::moves::Mover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, Pose const &)protocols::enzdes::BackboneSamplerprotectedvirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
Pose typedefprotocols::enzdes::BackboneSampler
PoseCOP typedefprotocols::moves::Mover
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reorder_foldtree_around_mobile_regions(core::pose::Pose &pose, core::Size const &jump_id, utility::vector1< bool > const &mobile_bb, core::Size const &lig_id) const protocols::ligand_docking::LigandBaseProtocol
reset_status()protocols::moves::Mover
restrain_ligand_nbr_atom(core::pose::Pose &pose, core::Size lig_id, core::Real stddev_Angstroms) const protocols::ligand_docking::LigandBaseProtocolprotected
restrain_protein_Calphas(core::pose::Pose &pose, utility::vector1< bool > const &is_restrained, core::scoring::func::FuncOP restr_func) const protocols::ligand_docking::LigandBaseProtocol
save_state(SerializableState &state)protocols::moves::Movervirtual
sc_interface_padding_protocols::ligand_docking::LigandBaseProtocolprotected
ScoreFunctionCOP typedefprotocols::enzdes::BackboneSampler
ScoreFunctionOP typedefprotocols::enzdes::BackboneSampler
scorefxn_protocols::ligand_docking::LigandBaseProtocolprotected
scorefxn_repack_protocols::enzdes::BackboneSamplerprivate
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_type(std::string const &setting)protocols::moves::Moverinline
setup_bbmin_foldtree(core::pose::Pose &pose, core::Size const &jump_id, core::Real cutoff_dist, core::Real stddev_Angstroms)protocols::ligand_docking::LigandBaseProtocolprotected
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
soft_scorefxn_protocols::ligand_docking::LigandBaseProtocolprotected
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
unboundrot_protocols::ligand_docking::LigandBaseProtocolprotected
use_soft_rep_protocols::ligand_docking::LigandBaseProtocolprotected
~BackboneSampler()protocols::enzdes::BackboneSamplervirtual
~LigandBaseProtocol()protocols::ligand_docking::LigandBaseProtocolvirtual
~Mover()protocols::moves::Movervirtual