protocols::forge::remodel::ResidueVicinityInfo Class Reference

small helper class for the ResidueVicinityRCG More...

#include <ResidueVicinityRCG.hh>

Public Member Functions
	ResidueVicinityInfo (core::Size old_seqpos, utility::vector1< core::Size > const &residue_atoms, utility::vector1< core::Size > const &loopres_atoms, core::Size desired_remodelres_in_vicinity)
virtual	~ResidueVicinityInfo ()
core::Size	old_seqpos () const
utility::vector1< core::Size > const &	residue_atoms () const
utility::vector1< core::Size > const &	residue_base_atoms () const
utility::vector1< core::Size > const &	residue_base2_atoms () const
utility::vector1< core::Size > const &	loopres_atoms () const
utility::vector1< core::Size > const &	loopres_base_atoms () const
utility::vector1< core::Size > const &	loopres_base2_atoms () const
void	set_residue_base_atoms (utility::vector1< core::Size > const &residue_base_atoms)
void	set_residue_base2_atoms (utility::vector1< core::Size > const &residue_base2_atoms)
void	set_loopres_base_atoms (utility::vector1< core::Size > const &loopres_base_atoms)
void	set_loopres_base2_atoms (utility::vector1< core::Size > const &loopres_base2_atoms)
core::Size	desired_remodelres_in_vicinity () const
core::scoring::func::FuncOP	dis () const
core::scoring::func::FuncOP	loop_ang () const
core::scoring::func::FuncOP	targ_ang () const
core::scoring::func::FuncOP	loop_dih () const
core::scoring::func::FuncOP	targ_dih () const
core::scoring::func::FuncOP	lt_dih () const
void	set_dis (core::scoring::func::FuncOP dis)
void	set_loop_ang (core::scoring::func::FuncOP loop_ang)
void	set_targ_ang (core::scoring::func::FuncOP targ_ang)
void	set_loop_dih (core::scoring::func::FuncOP loop_dih)
void	set_targ_dih (core::scoring::func::FuncOP targ_dih)
void	set_lt_dih (core::scoring::func::FuncOP lt_dih)

Private Attributes
core::Size	old_seqpos_
utility::vector1< core::Size >	residue_atoms_
utility::vector1< core::Size >	residue_base_atoms_
utility::vector1< core::Size >	residue_base2_atoms_
utility::vector1< core::Size >	loopres_atoms_
utility::vector1< core::Size >	loopres_base_atoms_
utility::vector1< core::Size >	loopres_base2_atoms_
core::scoring::func::FuncOP	dis_
core::scoring::func::FuncOP	loop_ang_
core::scoring::func::FuncOP	targ_ang_
core::scoring::func::FuncOP	loop_dih_
core::scoring::func::FuncOP	targ_dih_
core::scoring::func::FuncOP	lt_dih_
core::Size	desired_remodelres_in_vicinity_

Detailed Description

small helper class for the ResidueVicinityRCG

Constructor & Destructor Documentation

protocols::forge::remodel::ResidueVicinityInfo::ResidueVicinityInfo	(	core::Size	old_seqpos,
		utility::vector1< core::Size > const &	residue_atoms,
		utility::vector1< core::Size > const &	loopres_atoms,
		core::Size	desired_remodelres_in_vicinity
	)

protocols::forge::remodel::ResidueVicinityInfo::~ResidueVicinityInfo ( )

virtual

Member Function Documentation

core::Size protocols::forge::remodel::ResidueVicinityInfo::desired_remodelres_in_vicinity ( ) const

inline

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::dis

(

)

const

References dis_.

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair(), and set_dis().

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::loop_ang

(

)

const

References loop_ang_.

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair(), and set_loop_ang().

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::loop_dih

(

)

const

References loop_dih_.

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair(), and set_loop_dih().

utility::vector1< core::Size > const& protocols::forge::remodel::ResidueVicinityInfo::loopres_atoms ( ) const

inline

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair().

utility::vector1< core::Size > const& protocols::forge::remodel::ResidueVicinityInfo::loopres_base2_atoms ( ) const

inline

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair().

utility::vector1< core::Size > const& protocols::forge::remodel::ResidueVicinityInfo::loopres_base_atoms ( ) const

inline

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair().

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::lt_dih

(

)

const

References lt_dih_.

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair(), and set_lt_dih().

core::Size protocols::forge::remodel::ResidueVicinityInfo::old_seqpos ( ) const

inline

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair().

utility::vector1< core::Size > const& protocols::forge::remodel::ResidueVicinityInfo::residue_atoms ( ) const

inline

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair().

utility::vector1< core::Size > const& protocols::forge::remodel::ResidueVicinityInfo::residue_base2_atoms ( ) const

inline

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair().

utility::vector1< core::Size > const& protocols::forge::remodel::ResidueVicinityInfo::residue_base_atoms ( ) const

inline

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair().

void protocols::forge::remodel::ResidueVicinityInfo::set_dis

(

core::scoring::func::FuncOP

dis

)

References dis(), and dis_.

void protocols::forge::remodel::ResidueVicinityInfo::set_loop_ang

(

core::scoring::func::FuncOP

loop_ang

)

References loop_ang(), and loop_ang_.

void protocols::forge::remodel::ResidueVicinityInfo::set_loop_dih

(

core::scoring::func::FuncOP

loop_dih

)

References loop_dih(), and loop_dih_.

void protocols::forge::remodel::ResidueVicinityInfo::set_loopres_base2_atoms ( utility::vector1< core::Size > const &  loopres_base2_atoms )

inline

void protocols::forge::remodel::ResidueVicinityInfo::set_loopres_base_atoms ( utility::vector1< core::Size > const &  loopres_base_atoms )

inline

void protocols::forge::remodel::ResidueVicinityInfo::set_lt_dih

(

core::scoring::func::FuncOP

lt_dih

)

References lt_dih(), and lt_dih_.

void protocols::forge::remodel::ResidueVicinityInfo::set_residue_base2_atoms ( utility::vector1< core::Size > const &  residue_base2_atoms )

inline

void protocols::forge::remodel::ResidueVicinityInfo::set_residue_base_atoms ( utility::vector1< core::Size > const &  residue_base_atoms )

inline

void protocols::forge::remodel::ResidueVicinityInfo::set_targ_ang

(

core::scoring::func::FuncOP

targ_ang

)

References targ_ang(), and targ_ang_.

void protocols::forge::remodel::ResidueVicinityInfo::set_targ_dih

(

core::scoring::func::FuncOP

targ_dih

)

References targ_dih(), and targ_dih_.

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::targ_ang

(

)

const

References targ_ang_.

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair(), and set_targ_ang().

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::targ_dih

(

)

const

References targ_dih_.

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair(), and set_targ_dih().

Member Data Documentation

core::Size protocols::forge::remodel::ResidueVicinityInfo::desired_remodelres_in_vicinity_

private

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::dis_

private

Referenced by dis(), and set_dis().

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::loop_ang_

private

Referenced by loop_ang(), and set_loop_ang().

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::loop_dih_

private

Referenced by loop_dih(), and set_loop_dih().

utility::vector1< core::Size > protocols::forge::remodel::ResidueVicinityInfo::loopres_atoms_

private

utility::vector1< core::Size > protocols::forge::remodel::ResidueVicinityInfo::loopres_base2_atoms_

private

utility::vector1< core::Size > protocols::forge::remodel::ResidueVicinityInfo::loopres_base_atoms_

private

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::lt_dih_

private

Referenced by lt_dih(), and set_lt_dih().

core::Size protocols::forge::remodel::ResidueVicinityInfo::old_seqpos_

private

utility::vector1< core::Size > protocols::forge::remodel::ResidueVicinityInfo::residue_atoms_

private

utility::vector1< core::Size > protocols::forge::remodel::ResidueVicinityInfo::residue_base2_atoms_

private

utility::vector1< core::Size > protocols::forge::remodel::ResidueVicinityInfo::residue_base_atoms_

private

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::targ_ang_

private

Referenced by set_targ_ang(), and targ_ang().

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::targ_dih_

private

Referenced by set_targ_dih(), and targ_dih().

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The documentation for this class was generated from the following files:

• src/protocols/forge/remodel/ResidueVicinityRCG.hh
• src/protocols/forge/remodel/ResidueVicinityRCG.cc