protocols::toolbox::task_operations::SelectResiduesWithinChainOperation Class Reference

#include <SelectResiduesWithinChain.hh>

Public Types
typedef RestrictOperationsBase	parent
Public Types inherited from protocols::toolbox::task_operations::RestrictOperationsBase
typedef core::pack::task::operation::TaskOperation	TaskOperation
typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP
typedef TaskOperation	parent

Public Member Functions
	SelectResiduesWithinChainOperation ()
virtual	~SelectResiduesWithinChainOperation ()
virtual TaskOperationOP	clone () const
virtual void	apply (core::pose::Pose const &, core::pack::task::PackerTask &) const
	restricts to repacking all residues outside of design_shell_ around each residue More...
virtual void	parse_tag (TagCOP, DataMap &)
core::Size	chain () const
void	chain (core::Size const c)
utility::vector1< core::Size >	resid ()
void	add_res (core::Size const resid)
void	allow_design (bool const b)
bool	allow_design () const
void	allow_repacking (bool const b)
bool	allow_repacking () const
void	modify_unselected_residues (bool const b)
bool	modify_unselected_residues () const
Public Member Functions inherited from protocols::toolbox::task_operations::RestrictOperationsBase
	RestrictOperationsBase ()
virtual	~RestrictOperationsBase ()

Private Attributes
core::Size	chain_
utility::vector1< core::Size >	resid_
bool	allow_design_
bool	allow_repacking_
bool	modify_unselected_residues_

Additional Inherited Members
Protected Member Functions inherited from protocols::toolbox::task_operations::RestrictOperationsBase
void	run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
	this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Member Typedef Documentation

typedef RestrictOperationsBase protocols::toolbox::task_operations::SelectResiduesWithinChainOperation::parent

Constructor & Destructor Documentation

protocols::toolbox::task_operations::SelectResiduesWithinChainOperation::SelectResiduesWithinChainOperation

(

)

References resid_.

Referenced by clone().

protocols::toolbox::task_operations::SelectResiduesWithinChainOperation::~SelectResiduesWithinChainOperation ( )

virtual

Member Function Documentation

void protocols::toolbox::task_operations::SelectResiduesWithinChainOperation::add_res ( core::Size const  resid )

inline

References resid_.

void protocols::toolbox::task_operations::SelectResiduesWithinChainOperation::allow_design ( bool const  b )

inline

References allow_design_, and protocols::match::upstream::b.

bool protocols::toolbox::task_operations::SelectResiduesWithinChainOperation::allow_design ( ) const

inline

References allow_design_.

Referenced by apply(), and parse_tag().

void protocols::toolbox::task_operations::SelectResiduesWithinChainOperation::allow_repacking ( bool const  b )

inline

References allow_repacking_, and protocols::match::upstream::b.

bool protocols::toolbox::task_operations::SelectResiduesWithinChainOperation::allow_repacking ( ) const

inline

References allow_repacking_.

Referenced by apply(), and parse_tag().

void protocols::toolbox::task_operations::SelectResiduesWithinChainOperation::apply ( core::pose::Pose const &  pose, core::pack::task::PackerTask &  task  ) const

virtual

restricts to repacking all residues outside of design_shell_ around each residue

Implements protocols::toolbox::task_operations::RestrictOperationsBase.

References allow_design(), allow_repacking(), core::pack::task::operation::OperateOnCertainResidues::apply(), core::conformation::Residue::chain(), chain(), core::conformation::Conformation::chain_begin(), core::pose::Pose::conformation(), modify_unselected_residues(), core::conformation::Conformation::num_chains(), core::pack::task::operation::OperateOnCertainResidues::op(), resid_, core::pose::Pose::residue(), core::pack::task::operation::OperateOnCertainResidues::residue_indices(), core::pose::Pose::total_residue(), protocols::toolbox::task_operations::TR, and utility_exit_with_message.

core::Size protocols::toolbox::task_operations::SelectResiduesWithinChainOperation::chain ( ) const

inline

References chain_.

Referenced by apply(), and parse_tag().

void protocols::toolbox::task_operations::SelectResiduesWithinChainOperation::chain ( core::Size const  c )

inline

References chain_.

core::pack::task::operation::TaskOperationOP protocols::toolbox::task_operations::SelectResiduesWithinChainOperation::clone ( ) const

virtual

Implements protocols::toolbox::task_operations::RestrictOperationsBase.

References SelectResiduesWithinChainOperation().

void protocols::toolbox::task_operations::SelectResiduesWithinChainOperation::modify_unselected_residues ( bool const  b )

inline

References protocols::match::upstream::b, and modify_unselected_residues_.

bool protocols::toolbox::task_operations::SelectResiduesWithinChainOperation::modify_unselected_residues ( ) const

inline

References modify_unselected_residues_.

Referenced by apply(), and parse_tag().

void protocols::toolbox::task_operations::SelectResiduesWithinChainOperation::parse_tag ( TagCOP  tag, DataMap &    )

virtual

References allow_design(), allow_repacking(), chain(), modify_unselected_residues(), resid(), resid_, runtime_assert, and protocols::toolbox::task_operations::TR.

utility::vector1< core::Size > protocols::toolbox::task_operations::SelectResiduesWithinChainOperation::resid ( )

inline

References resid_.

Referenced by parse_tag().

Member Data Documentation

bool protocols::toolbox::task_operations::SelectResiduesWithinChainOperation::allow_design_

private

Referenced by allow_design().

bool protocols::toolbox::task_operations::SelectResiduesWithinChainOperation::allow_repacking_

private

Referenced by allow_repacking().

core::Size protocols::toolbox::task_operations::SelectResiduesWithinChainOperation::chain_

private

Referenced by chain().

bool protocols::toolbox::task_operations::SelectResiduesWithinChainOperation::modify_unselected_residues_

private

Referenced by modify_unselected_residues().

utility::vector1< core::Size > protocols::toolbox::task_operations::SelectResiduesWithinChainOperation::resid_

private

Referenced by add_res(), apply(), parse_tag(), resid(), and SelectResiduesWithinChainOperation().

---

The documentation for this class was generated from the following files:

• src/protocols/toolbox/task_operations/SelectResiduesWithinChain.hh
• src/protocols/toolbox/task_operations/SelectResiduesWithinChain.cc