protocols::kinematic_closure::perturbers::VicinityPerturber Class Reference

Limit sampling to phi/psi pairs within some distance of a target loop. More...

#include <VicinityPerturber.hh>

Public Member Functions
	VicinityPerturber (Pose const &target)
	Constructor which takes a target. Sampling will be limited to phi/psi pairs within some delta of this target. More...
std::string	get_name () const
	Return the name of this perturber. More...
void	perturb_subset (Pose const &pose, IndexList const &residues, ClosureProblemOP problem)
	Perturb the given residues. More...
void	perturb_subset_with_balance (Pose const &pose, IndexList const &residues, ClosureProblemOP problem)
	Perturb the given residues such that detailed balance is obeyed. More...
Public Member Functions inherited from protocols::kinematic_closure::perturbers::Perturber
void	perturb (Pose const &pose, ClosureProblemOP problem)
	Perturb all of the non-pivot residues. More...
void	perturb_with_balance (Pose const &pose, ClosureProblemOP problem)
	Perturb all of the non-pivot residues such that detailed balance is obeyed. More...

Private Attributes
Pose const	target_
Real const	spread_

Detailed Description

Limit sampling to phi/psi pairs within some distance of a target loop.

Constructor & Destructor Documentation

protocols::kinematic_closure::perturbers::VicinityPerturber::VicinityPerturber

(

Pose const &

target

)

Constructor which takes a target. Sampling will be limited to phi/psi pairs within some delta of this target.

Note that the given target must have the same number of residues as the pose being sampled.

Member Function Documentation

std::string protocols::kinematic_closure::perturbers::VicinityPerturber::get_name ( ) const

inlinevirtual

Return the name of this perturber.

Implements protocols::kinematic_closure::perturbers::Perturber.

void protocols::kinematic_closure::perturbers::VicinityPerturber::perturb_subset ( Pose const &  pose, IndexList const &  residues, ClosureProblemOP  problem  )

virtual

Perturb the given residues.

Implements protocols::kinematic_closure::perturbers::Perturber.

References DEGREES, gaussian(), core::pose::Pose::phi(), core::pose::Pose::psi(), spread_, and target_.

void protocols::kinematic_closure::perturbers::VicinityPerturber::perturb_subset_with_balance ( Pose const &  pose, IndexList const &  residues, ClosureProblemOP  problem  )

virtual

Perturb the given residues such that detailed balance is obeyed.

If not reimplemented, this method will kill rosetta and complain that no balanced implementation of this algorithm exists.

Reimplemented from protocols::kinematic_closure::perturbers::Perturber.

References DEGREES, log(), core::pose::Pose::phi(), core::pose::Pose::psi(), spread_, target_, and uniform().

Member Data Documentation

Real const protocols::kinematic_closure::perturbers::VicinityPerturber::spread_

private

Referenced by perturb_subset(), and perturb_subset_with_balance().

Pose const protocols::kinematic_closure::perturbers::VicinityPerturber::target_

private

Referenced by perturb_subset(), and perturb_subset_with_balance().

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The documentation for this class was generated from the following files:

• src/protocols/kinematic_closure/perturbers/VicinityPerturber.hh
• src/protocols/kinematic_closure/perturbers/VicinityPerturber.cc