#include <protocols/stepwise/modeler/rna/rigid_body/FloatingBaseClasses.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/types.hh>
#include <utility/vector1.hh>
#include <numeric/xyzMatrix.hh>
#include <core/conformation/Residue.fwd.hh>
#include <protocols/stepwise/sampler/rigid_body/EulerAngles.fwd.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.

	protocols::stepwise

	protocols::stepwise::modeler

	protocols::stepwise::modeler::rna

	protocols::stepwise::modeler::rna::rigid_body

Macros
#define	STANDARD_CENTROID_BIN_SIZE 1.0

#define	STANDARD_EULER_ANGLE_BIN_SIZE 20

#define	STANDARD_EULER_Z_BIN_SIZE 0.05

Typedefs
typedef numeric::xyzMatrix < core::Real >	Matrix

Functions
core::Real	protocols::stepwise::modeler::rna::rigid_body::get_max_centroid_to_atom_distance (utility::vector1< core::conformation::ResidueOP > const &rsd_at_origin_list, std::string const atom_name)

void	protocols::stepwise::modeler::rna::rigid_body::initialize_xyz_parameters (Distance &max_distance, Distance &max_distance_squared, int &centroid_bin_min, int &centroid_bin_max, utility::vector1< core::conformation::ResidueOP > const &moving_rsd_at_origin_list, Size const gap_size_to_anchor)

utility::vector1 < core::pose::PoseOP >	protocols::stepwise::modeler::rna::rigid_body::setup_pose_with_moving_residue_alternative_list (pose::Pose const &pose, Size const &moving_res, bool const extra_chi, bool const use_phenix_geo)

int	protocols::stepwise::modeler::rna::rigid_body::DOF_bin_value (std::map< BaseBin, int, compare_base_bin >::const_iterator const &base_bin_it, std::string const &DOF)

Real	protocols::stepwise::modeler::rna::rigid_body::DOF_bin_size (std::string const &DOF)

void	protocols::stepwise::modeler::rna::rigid_body::analyze_base_bin_map (std::map< BaseBin, int, compare_base_bin > const &base_bin_map, std::string const foldername)

void	protocols::stepwise::modeler::rna::rigid_body::analyze_base_bin_map (std::map< BaseBin, int, compare_base_bin > const &base_bin_map, std::string const &DOF_one, std::string const &DOF_two, std::string const foldername)