#include <SymRotamerTrialsMover.hh>

Public Types
typedef core::conformation::symmetry::SymmetricConformation	SymmetricConformation

typedef core::conformation::symmetry::SymmetryInfo	SymmetryInfo

Public Types inherited from protocols::simple_moves::RotamerTrialsMover
typedef core::scoring::ScoreFunctionOP	ScoreFunctionOP

typedef core::scoring::ScoreFunctionCOP	ScoreFunctionCOP

typedef core::pack::task::PackerTask	PackerTask

typedef core::pack::task::PackerTaskOP	PackerTaskOP

typedef core::pack::task::PackerTaskCOP	PackerTaskCOP

typedef core::pack::task::TaskFactoryCOP	TaskFactoryCOP

typedef protocols::moves::MoverOP	MoverOP

Public Types inherited from protocols::moves::Mover
typedef utility::tag::TagCOP	TagCOP

typedef core::pose::Pose	Pose

typedef core::pose::PoseCOP	PoseCOP

typedef protocols::filters::Filters_map	Filters_map

typedef std::list< std::string >	Strings

Public Member Functions
	SymRotamerTrialsMover ()

	SymRotamerTrialsMover (ScoreFunctionCOP scorefxn_in, PackerTask &task_in)
	constructor with PackerTask. use a PackerTask ONLY for fixed-sequence work. WARNING TO ANY DESIGNER WHO PASSES IN A TASK: YOUR DESIGN STEPS WILL BE UNDONE AS THIS TASK CONCEIVES OF THE INPUT SEQUENCE THAT CORRESPONDS TO THE ORIGINAL SEQUENCE More...

	SymRotamerTrialsMover (ScoreFunctionCOP scorefxn_in, TaskFactoryCOP factory_in)
	constructor with TaskFactory More...

	~SymRotamerTrialsMover ()

void	apply (core::pose::Pose &pose)

virtual std::string	get_name () const
	Each derived class must specify its name. The class name. More...

void	make_symmetric_task (core::pose::Pose &pose, core::pack::task::PackerTaskOP task)

virtual void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data, filters::Filters_map const &filters, moves::Movers_map const &movers, core::pose::Pose const &pose)
	parse xml More...

Public Member Functions inherited from protocols::simple_moves::RotamerTrialsMover
	RotamerTrialsMover ()

	RotamerTrialsMover (ScoreFunctionCOP scorefxn_in, PackerTask &task_in)
	constructor with PackerTask. use a PackerTask ONLY for fixed-sequence work. WARNING TO ANY DESIGNER WHO PASSES IN A TASK: YOUR DESIGN STEPS WILL BE UNDONE AS THIS TASK CONCEIVES OF THE INPUT SEQUENCE THAT CORRESPONDS TO THE ORIGINAL SEQUENCE More...

	RotamerTrialsMover (ScoreFunctionCOP scorefxn_in, TaskFactoryCOP factory_in)
	constructor with TaskFactory More...

	RotamerTrialsMover (RotamerTrialsMover const &rval)
	copy constructor More...

virtual	~RotamerTrialsMover ()
	destructor More...

virtual protocols::moves::MoverOP	clone () const
	clone this object More...

virtual protocols::moves::MoverOP	fresh_instance () const
	create this type of object More...

virtual void	show (std::ostream &output=std::cout) const
	Outputs details about the Mover, including current settings. More...

void	score_function (core::scoring::ScoreFunctionCOP sf)

void	task_factory (core::pack::task::TaskFactoryCOP tf)

Public Member Functions inherited from protocols::moves::Mover
	Mover ()

virtual	~Mover ()

virtual MoverSP	create ()

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	parse_state (SerializableState const &state)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)

virtual void	save_state (SerializableState &state)

	Mover (std::string const &type_name)
	sets the type for a mover; name_ has been removed (2010/05/14) More...

	Mover (Mover const &other)

Mover &	operator= (Mover const &other)
	assignment operator More...

virtual core::Real	last_proposal_density_ratio ()

std::string const &	type () const

void	set_type (std::string const &setting)

std::string	get_current_tag () const
	A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More...

void	set_current_tag (std::string const &new_tag)

virtual void	set_input_pose (PoseCOP pose)
	setter for poses contained for rms More...

virtual void	set_native_pose (PoseCOP pose)
	setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More...

PoseCOP	get_input_pose () const

PoseCOP	get_native_pose () const

virtual void	test_move (Pose &pose)
	: Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More...

void	type (const std::string &type_in)

std::string	get_type () const

MoverStatus	get_last_move_status () const
	end parser interface, start Job Distributor interface///////////// More...

void	reset_status ()
	resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More...

virtual core::pose::PoseOP	get_additional_output ()
	Mechanism by which a mover may return multiple output poses from a single input pose. More...

virtual void	clear_info ()
	Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More...

virtual Strings &	info ()
	non-const accessor More...

virtual Strings const &	info () const
	const accessor More...

virtual bool	reinitialize_for_each_job () const
	Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More...

virtual bool	reinitialize_for_new_input () const
	Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More...

void	set_current_job (protocols::jobdist::BasicJobCOP job)

jobdist::BasicJobCOP	get_current_job () const

Additional Inherited Members
Static Public Member Functions inherited from protocols::moves::Mover
static std::string	name ()

static void	register_options ()
	Overload this static method if you access options within the mover. More...

Protected Member Functions inherited from protocols::simple_moves::RotamerTrialsMover
ScoreFunctionCOP	scorefxn () const
	read access for derived classes More...

PackerTaskCOP	task (core::pose::Pose const &pose) const
	read access for derived classes, pose needed to run TaskFactory More...

Protected Member Functions inherited from protocols::moves::Mover
void	set_last_move_status (MoverStatus status)
	nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More...

Member Typedef Documentation

typedef core::conformation::symmetry::SymmetricConformation protocols::simple_moves::symmetry::SymRotamerTrialsMover::SymmetricConformation

typedef core::conformation::symmetry::SymmetryInfo protocols::simple_moves::symmetry::SymRotamerTrialsMover::SymmetryInfo

Constructor & Destructor Documentation

protocols::simple_moves::symmetry::SymRotamerTrialsMover::SymRotamerTrialsMover ( )

References protocols::moves::Mover::type().

protocols::simple_moves::symmetry::SymRotamerTrialsMover::SymRotamerTrialsMover	(	ScoreFunctionCOP	scorefxn_in,
		PackerTask &	task_in
	)

constructor with PackerTask. use a PackerTask ONLY for fixed-sequence work. WARNING TO ANY DESIGNER WHO PASSES IN A TASK: YOUR DESIGN STEPS WILL BE UNDONE AS THIS TASK CONCEIVES OF THE INPUT SEQUENCE THAT CORRESPONDS TO THE ORIGINAL SEQUENCE

References protocols::moves::Mover::type().

protocols::simple_moves::symmetry::SymRotamerTrialsMover::SymRotamerTrialsMover	(	ScoreFunctionCOP	scorefxn_in,
		TaskFactoryCOP	factory_in
	)

constructor with TaskFactory

References protocols::moves::Mover::type().

protocols::simple_moves::symmetry::SymRotamerTrialsMover::~SymRotamerTrialsMover ( )

Member Function Documentation

void protocols::simple_moves::symmetry::SymRotamerTrialsMover::apply ( core::pose::Pose & pose )

virtual

Reimplemented from protocols::simple_moves::RotamerTrialsMover.

Reimplemented in protocols::simple_moves::symmetry::SymEnergyCutRotamerTrialsMover.

References protocols::simple_moves::RotamerTrialsMover::clone(), make_symmetric_task(), protocols::simple_moves::RotamerTrialsMover::scorefxn(), core::pack::symmetric_rotamer_trials(), and protocols::simple_moves::RotamerTrialsMover::task().

Referenced by protocols::protein_interface_design::filters::FilterScanFilter::single_substitution().

std::string protocols::simple_moves::symmetry::SymRotamerTrialsMover::get_name ( ) const

virtual

Each derived class must specify its name. The class name.

Reimplemented from protocols::simple_moves::RotamerTrialsMover.

Reimplemented in protocols::simple_moves::symmetry::SymEnergyCutRotamerTrialsMover.

void protocols::simple_moves::symmetry::SymRotamerTrialsMover::make_symmetric_task	(	core::pose::Pose &	pose,
		core::pack::task::PackerTaskOP	task
	)

References core::pose::Pose::conformation(), core::pose::symmetry::is_symmetric(), core::pack::task::PackerTask::restrict_to_residues(), core::conformation::symmetry::SymmetricConformation::Symmetry_Info(), and core::pose::Pose::total_residue().

Referenced by apply().

void protocols::simple_moves::symmetry::SymRotamerTrialsMover::parse_my_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	data,
		filters::Filters_map const &	filters,
		moves::Movers_map const &	movers,
		core::pose::Pose const &	pose
	)

virtual

parse xml

Reimplemented from protocols::simple_moves::RotamerTrialsMover.

References protocols::simple_moves::RotamerTrialsMover::parse_my_tag().

The documentation for this class was generated from the following files:

src/protocols/simple_moves/symmetry/SymRotamerTrialsMover.hh
src/protocols/simple_moves/symmetry/SymRotamerTrialsMover.cc

Public Types

Public Member Functions

Additional Inherited Members

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation