SecondaryMatcherToUpstreamResidue.hh File Reference

Class declaration for secondary matcher that generates upstream-only hits matching the geometry of one upstream residue with another upstream residue generated in a previous round. More...

#include <protocols/match/downstream/SecondaryMatcherToUpstreamResidue.fwd.hh>
#include <protocols/match/BumpGrid.fwd.hh>
#include <protocols/match/Matcher.hh>
#include <protocols/match/Hit.hh>
#include <protocols/match/downstream/DownstreamAlgorithm.hh>
#include <protocols/match/downstream/SecMatchResiduePairEvaluator.fwd.hh>
#include <protocols/match/upstream/UpstreamBuilder.hh>
#include <core/types.hh>
#include <core/chemical/ResidueType.hh>
#include <core/conformation/Residue.fwd.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <utility/pointer/ReferenceCount.hh>
#include <list>
#include <map>
#include <string>
#include <core/id/AtomID.hh>
#include <utility/OrderedTuple.fwd.hh>
#include <utility/vector1.hh>

Classes
class	protocols::match::downstream::SecondaryMatcherToUpstreamResidue
	A class for an algorithm. Given a conformation of the upstream partner, the algorithm is responsible for producing a set of hits. More...
class	protocols::match::downstream::TargetRotamerCoords
class	protocols::match::downstream::SecondaryMatchUpstreamResProcessor
	A simple class to respond to the UpstreamBuilder's process_hit method and pass on the coordinates to its "owning" SecondaryMatcherToUpstreamResidue object. More...
struct	protocols::match::downstream::us_secmatch_hit_compare
	A simple struct to use in list.sort() to ensure that the hits returned by a secondary matcher which has possibly generated upstream hits out-of-order, will return an ordered-hit-list in its build_hits_at_all_positions() method. More...

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::match
	protocols::match::downstream

Detailed Description

Class declaration for secondary matcher that generates upstream-only hits matching the geometry of one upstream residue with another upstream residue generated in a previous round.

Author

Andrew Leaver-Fay (aleav.nosp@m.erfa.nosp@m.y@gma.nosp@m.il.c.nosp@m.om)

Florian Richter (floso.nosp@m.pher.nosp@m.@gmai.nosp@m.l.co.nosp@m.m)