Rosetta Protocols  2014.35
protocols::stepwise::legacy::modeler::protein::StepWiseProteinModeler Member List

This is the complete list of members for protocols::stepwise::legacy::modeler::protein::StepWiseProteinModeler, including all inherited members.

apply(pose::Pose &pose)protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelervirtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
bridge_res_protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::moves::Movervirtual
clone_modeler() const protocols::stepwise::legacy::modeler::protein::StepWiseProteinModeler
create()protocols::moves::Movervirtual
do_ccd_protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerprivate
do_minimizing(core::pose::Pose &pose, utility::vector1< pose::PoseOP > &pose_list)protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerprivate
do_residue_modeler(core::pose::Pose &pose, utility::vector1< pose::PoseOP > &pose_list)protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerprivate
figure_out_moving_res_list(pose::Pose const &pose)protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerprivate
figure_out_protein_moving_res_list_from_most_distal_res(pose::Pose const &pose, Size const moving_res)protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerprivate
Filters_map typedefprotocols::moves::Mover
fresh_instance() const protocols::moves::Movervirtual
full_optimize_protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerprivate
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerinlinevirtual
get_native_pose() const protocols::moves::Mover
get_type() const protocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
initialize_working_parameters_and_root(pose::Pose &pose)protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerprivate
input_streams_protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
modeler_successful(utility::vector1< pose::PoseOP > &pose_list)protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
moving_res_protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerprivate
moving_res_list_protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerprivate
name()protocols::moves::Moverinlinestatic
operator=(StepWiseProteinModeler const &src)protocols::stepwise::legacy::modeler::protein::StepWiseProteinModeler
protocols::moves::Mover::operator=(Mover const &other)protocols::moves::Mover
options()protocols::stepwise::legacy::modeler::protein::StepWiseProteinModeler
options_protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerprivate
pack_scorefxn_protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerprivate
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Movervirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
register_options()protocols::moves::Moverinlinestatic
reinitialize()protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerprivate
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
save_state(SerializableState &state)protocols::moves::Movervirtual
scorefxn_protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerprivate
set_bridge_res(utility::vector1< Size > const &setting)protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerinline
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_input_streams(utility::vector1< InputStreamWithResidueInfoOP > const &input_streams)protocols::stepwise::legacy::modeler::protein::StepWiseProteinModeler
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_moving_res_and_reset(Size const moving_res)protocols::stepwise::legacy::modeler::protein::StepWiseProteinModeler
set_moving_res_list(utility::vector1< Size > const &setting)protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerinline
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_options(options::StepWiseModelerOptionsCOP options)protocols::stepwise::legacy::modeler::protein::StepWiseProteinModeler
set_skip_modeler(bool const &setting)protocols::stepwise::legacy::modeler::protein::StepWiseProteinModeler
set_type(std::string const &setting)protocols::moves::Moverinline
set_working_minimize_res(utility::vector1< Size > const &setting)protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerinline
set_working_parameters(stepwise::modeler::working_parameters::StepWiseWorkingParametersCOP working_parameters)protocols::stepwise::legacy::modeler::protein::StepWiseProteinModeler
setup_working_parameters_for_stepwise_with_full_model_info(core::pose::Pose &pose)protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerprivate
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
StepWiseProteinModeler(scoring::ScoreFunctionOP scorefxn)protocols::stepwise::legacy::modeler::protein::StepWiseProteinModeler
StepWiseProteinModeler(core::scoring::ScoreFunctionOP scorefxn, utility::vector1< Size > const &moving_res_list)protocols::stepwise::legacy::modeler::protein::StepWiseProteinModeler
StepWiseProteinModeler(StepWiseProteinModeler const &src)protocols::stepwise::legacy::modeler::protein::StepWiseProteinModeler
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
working_minimize_res_protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerprivate
working_parameters_protocols::stepwise::legacy::modeler::protein::StepWiseProteinModelerprivate
~Mover()protocols::moves::Movervirtual
~StepWiseProteinModeler()protocols::stepwise::legacy::modeler::protein::StepWiseProteinModeler