protocols::fldsgn::filters::SheetTopologyFilter Class Reference

#include <SheetTopologyFilter.hh>

Public Types
typedef protocols::filters::Filter	Super
typedef protocols::filters::Filter	Filter
typedef std::string	String
typedef protocols::filters::FilterOP	FilterOP
typedef core::pose::Pose	Pose
typedef protocols::fldsgn::topology::StrandPairingSet	StrandPairingSet
typedef protocols::fldsgn::topology::StrandPairingSetOP	StrandPairingSetOP
typedef protocols::fldsgn::topology::SS_Info2	SS_Info2
typedef protocols::fldsgn::topology::SS_Info2_OP	SS_Info2_OP
typedef utility::tag::TagCOP	TagCOP
typedef protocols::filters::Filters_map	Filters_map
typedef basic::datacache::DataMap	DataMap
typedef protocols::moves::Movers_map	Movers_map

Public Member Functions
	SheetTopologyFilter ()
	SheetTopologyFilter (StrandPairingSetOP const &sps)
	SheetTopologyFilter (String const &sheet_topology)
	SheetTopologyFilter (SheetTopologyFilter const &rval)
virtual	~SheetTopologyFilter ()
virtual FilterOP	clone () const
virtual FilterOP	fresh_instance () const
void	filtered_sheet_topology (StrandPairingSetOP const &sps)
void	filtered_sheet_topology (String const &sheet_topology)
virtual std::string	name () const
virtual void	parse_my_tag (TagCOP tag, basic::datacache::DataMap &, Filters_map const &, Movers_map const &, Pose const &)
	parse xml More...
virtual bool	apply (Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual void	report (std::ostream &, core::pose::Pose const &) const
virtual core::Real	report_sm (core::pose::Pose const &) const
	used to report filter internals through a score or silent file More...
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

Private Attributes
String	filtered_sheet_topology_
bool	secstruct_input_
SS_Info2_OP	ssinfo_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef basic::datacache::DataMap protocols::fldsgn::filters::SheetTopologyFilter::DataMap

typedef protocols::filters::Filter protocols::fldsgn::filters::SheetTopologyFilter::Filter

typedef protocols::filters::FilterOP protocols::fldsgn::filters::SheetTopologyFilter::FilterOP

typedef protocols::filters::Filters_map protocols::fldsgn::filters::SheetTopologyFilter::Filters_map

typedef protocols::moves::Movers_map protocols::fldsgn::filters::SheetTopologyFilter::Movers_map

typedef core::pose::Pose protocols::fldsgn::filters::SheetTopologyFilter::Pose

typedef protocols::fldsgn::topology::SS_Info2 protocols::fldsgn::filters::SheetTopologyFilter::SS_Info2

typedef protocols::fldsgn::topology::SS_Info2_OP protocols::fldsgn::filters::SheetTopologyFilter::SS_Info2_OP

typedef protocols::fldsgn::topology::StrandPairingSet protocols::fldsgn::filters::SheetTopologyFilter::StrandPairingSet

typedef protocols::fldsgn::topology::StrandPairingSetOP protocols::fldsgn::filters::SheetTopologyFilter::StrandPairingSetOP

typedef std::string protocols::fldsgn::filters::SheetTopologyFilter::String

typedef protocols::filters::Filter protocols::fldsgn::filters::SheetTopologyFilter::Super

typedef utility::tag::TagCOP protocols::fldsgn::filters::SheetTopologyFilter::TagCOP

Constructor & Destructor Documentation

protocols::fldsgn::filters::SheetTopologyFilter::SheetTopologyFilter

(

)

Referenced by clone(), and fresh_instance().

protocols::fldsgn::filters::SheetTopologyFilter::SheetTopologyFilter

(

StrandPairingSetOP const &

sps

)

References filtered_sheet_topology_.

protocols::fldsgn::filters::SheetTopologyFilter::SheetTopologyFilter

(

String const &

sheet_topology

)

protocols::fldsgn::filters::SheetTopologyFilter::SheetTopologyFilter

(

SheetTopologyFilter const &

rval

)

virtual protocols::fldsgn::filters::SheetTopologyFilter::~SheetTopologyFilter ( )

inlinevirtual

Member Function Documentation

bool protocols::fldsgn::filters::SheetTopologyFilter::apply ( Pose const &  pose ) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References protocols::fldsgn::topology::calc_strand_pairing_set(), protocols::simple_filters::dssp(), filtered_sheet_topology_, protocols::fldsgn::topology::StrandPairingSet::name(), protocols::fldsgn::topology::NO_STRANDS, secstruct_input_, protocols::fldsgn::topology::StrandPairingSet::size(), ssinfo_, protocols::fldsgn::topology::StrandPairingSet::strand_pairing(), and tr.

virtual FilterOP protocols::fldsgn::filters::SheetTopologyFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References SheetTopologyFilter().

void protocols::fldsgn::filters::SheetTopologyFilter::filtered_sheet_topology

(

StrandPairingSetOP const &

sps

)

References filtered_sheet_topology_.

void protocols::fldsgn::filters::SheetTopologyFilter::filtered_sheet_topology

(

String const &

sheet_topology

)

References filtered_sheet_topology_.

virtual FilterOP protocols::fldsgn::filters::SheetTopologyFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References SheetTopologyFilter().

virtual std::string protocols::fldsgn::filters::SheetTopologyFilter::name ( ) const

inlinevirtual

Reimplemented from protocols::filters::Filter.

void protocols::fldsgn::filters::SheetTopologyFilter::parse_my_tag ( TagCOP  tag, basic::datacache::DataMap &  , Filters_map const &  , Movers_map const &  , Pose const &    )

virtual

parse xml

Reimplemented from protocols::filters::Filter.

References blueprint, filtered_sheet_topology_, runtime_assert, protocols::jd2::parser::BluePrint::secstruct(), secstruct_input_, ssinfo_, protocols::jd2::parser::BluePrint::strand_pairings(), and tr.

Member Data Documentation

String protocols::fldsgn::filters::SheetTopologyFilter::filtered_sheet_topology_

private

Referenced by apply(), filtered_sheet_topology(), parse_my_tag(), and SheetTopologyFilter().

bool protocols::fldsgn::filters::SheetTopologyFilter::secstruct_input_

private

Referenced by apply(), and parse_my_tag().

SS_Info2_OP protocols::fldsgn::filters::SheetTopologyFilter::ssinfo_

private

Referenced by apply(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• src/protocols/fldsgn/filters/SheetTopologyFilter.hh
• src/protocols/fldsgn/filters/SheetTopologyFilter.cc