protocols::frag_picker::scores::MakePhiPsiRmsd Class Reference

Matker class that produces a new PhiPsiRmsd object. More...

#include <PhiPsiRmsd.hh>

Public Member Functions
	MakePhiPsiRmsd ()
FragmentScoringMethodOP	make (Size, Real, bool, FragmentPickerOP, std::string)
	Creates a PhiPsiRmsd scoring method. More...
Public Member Functions inherited from protocols::frag_picker::scores::MakeFragmentScoringMethod
	MakeFragmentScoringMethod (std::string name)
std::string &	get_score_name ()

Detailed Description

Matker class that produces a new PhiPsiRmsd object.

Constructor & Destructor Documentation

protocols::frag_picker::scores::MakePhiPsiRmsd::MakePhiPsiRmsd ( )

inline

Member Function Documentation

FragmentScoringMethodOP protocols::frag_picker::scores::MakePhiPsiRmsd::make ( Size  priority, Real  lowest_acceptable_value, bool  use_lowest, FragmentPickerOP  , std::string  input_file  )

virtual

Creates a PhiPsiRmsd scoring method.

Parameters

priority	- priority of the scoring method. The higher value the earlier the score will be evaluated
lowest_acceptable_value	- if a calculated score is higher than this value, fragment will be neglected
FragmentPickerOP	object - not used
line	- the relevant line extracted from the scoring configuration file that defines this scoring method It could look like: "PhiPsiRmsd 140 -5.0 100.0 additional_string" where 140, -5.0 && 100.0 are priority, weight && treshold, respectively. The additional string may be: empty: then the maker tries to create a scoring object from a TALOS file trying in::file::talos_phi_psi flag. If fails, will try to use a pose from in::file::s a pdb file, pdb extension is necessary. This will create a pose && steal Phi && Psi a TALOS file with Phi/Psi prediction (tab extension is necessary)

Implements protocols::frag_picker::scores::MakeFragmentScoringMethod.

References in, in::file::native, option, core::import_pose::pose_from_pdb(), in::file::s, core::pose::Pose::sequence(), in::file::talos_phi_psi, protocols::frag_picker::scores::trPhiPsiRmsd, user, utility_exit_with_message, and protocols::frag_picker::PhiPsiTalosIO::write().

---

The documentation for this class was generated from the following files:

• src/protocols/frag_picker/scores/PhiPsiRmsd.hh
• src/protocols/frag_picker/scores/PhiPsiRmsd.cc