protocols::farna::ChunkSet Class Reference

#include <RNA_ChunkLibrary.hh>

Public Member Functions
	ChunkSet (utility::vector1< core::pose::MiniPoseOP > const &mini_pose_list, core::pose::ResMap const &res_map)
	ChunkSet (utility::vector1< core::pose::PoseOP > const &pose_list, core::pose::ResMap const &res_map)
	~ChunkSet ()
void	insert_chunk_into_pose (core::pose::Pose &pose, Size const &chunk_pose_index, protocols::toolbox::AllowInsertOP const &allow_insert) const
Size	num_chunks () const
std::map< core::id::AtomID, core::id::AtomID >	get_atom_id_map (core::pose::Pose &pose, protocols::toolbox::AllowInsertOP const &allow_insert) const
core::pose::MiniPoseOP const	mini_pose (Size const idx) const
bool	check_fold_tree_OK (core::pose::Pose const &pose)

Private Member Functions
void	filter_atom_id_map_with_mask (std::map< core::id::AtomID, core::id::AtomID > &atom_id_map) const

Private Attributes
utility::vector1 < core::pose::MiniPoseOP >	mini_pose_list_
core::pose::ResMap	res_map_
std::map< core::id::AtomID, bool >	atom_id_mask_

Constructor & Destructor Documentation

protocols::farna::ChunkSet::ChunkSet	(	utility::vector1< core::pose::MiniPoseOP > const &	mini_pose_list,
		core::pose::ResMap const &	res_map
	)

protocols::farna::ChunkSet::ChunkSet	(	utility::vector1< core::pose::PoseOP > const &	pose_list,
		core::pose::ResMap const &	res_map
	)

protocols::farna::ChunkSet::~ChunkSet

(

)

Member Function Documentation

bool protocols::farna::ChunkSet::check_fold_tree_OK

(

core::pose::Pose const &

pose

)

References core::kinematics::FoldTree::downstream_jump_residue(), core::pose::Pose::fold_tree(), core::pose::Pose::num_jump(), core::pose::Pose::total_residue(), and core::kinematics::FoldTree::upstream_jump_residue().

Referenced by protocols::farna::RNA_ChunkLibrary::check_fold_tree_OK().

void protocols::farna::ChunkSet::filter_atom_id_map_with_mask ( std::map< core::id::AtomID, core::id::AtomID > &  atom_id_map ) const

private

References utility_exit_with_message.

std::map< id::AtomID, id::AtomID > protocols::farna::ChunkSet::get_atom_id_map	(	core::pose::Pose &	pose,
		protocols::toolbox::AllowInsertOP const &	allow_insert
	)		const

References fold_tree.

Referenced by protocols::farna::RNA_ChunkLibrary::align_to_chunk().

void protocols::farna::ChunkSet::insert_chunk_into_pose	(	core::pose::Pose &	pose,
		Size const &	chunk_pose_index,
		protocols::toolbox::AllowInsertOP const &	allow_insert
	)		const

References core::pose::copydofs::copy_dofs().

Referenced by protocols::farna::RNA_ChunkLibrary::initialize_random_chunks(), and protocols::farna::RNA_ChunkLibrary::random_chunk_insertion().

core::pose::MiniPoseOP const protocols::farna::ChunkSet::mini_pose

(

Size const

idx

)

const

Referenced by protocols::farna::RNA_ChunkLibrary::align_to_chunk().

Size protocols::farna::ChunkSet::num_chunks ( ) const

inline

References mini_pose_list_.

Referenced by protocols::farna::RNA_ChunkLibrary::initialize_random_chunks(), and protocols::farna::RNA_ChunkLibrary::random_chunk_insertion().

Member Data Documentation

std::map< core::id::AtomID, bool > protocols::farna::ChunkSet::atom_id_mask_

private

utility::vector1< core::pose::MiniPoseOP > protocols::farna::ChunkSet::mini_pose_list_

private

Referenced by num_chunks().

core::pose::ResMap protocols::farna::ChunkSet::res_map_

private

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The documentation for this class was generated from the following files:

• src/protocols/farna/RNA_ChunkLibrary.hh
• src/protocols/farna/RNA_ChunkLibrary.cc