protocols::genetic_algorithm::EntityRandomizer Class Reference

#include <EntityRandomizer.hh>

Public Types
typedef utility::pointer::owning_ptr < EntityRandomizer >	OP
typedef utility::pointer::owning_ptr < EntityRandomizer const >	COP
typedef Entity::OP	EntityOP
typedef Entity::COP	EntityCOP

Public Member Functions
	EntityRandomizer ()
virtual	~EntityRandomizer ()
virtual EntityOP	random_entity ()
virtual void	mutate (Entity &entity)=0
virtual void	crossover (Entity &entity1, Entity &entity2)
	randomly swap [1, N-1] traits between two entities More...
virtual core::Size	entity_length () const
virtual void	set_mutation_rate (core::Real rate)
virtual core::Real	mutation_rate () const
virtual core::Size	library_size () const =0
virtual EntityCOP	entity_template () const
virtual void	set_entity_template (EntityCOP entity)

Protected Member Functions
virtual void	set_entity_length (core::Size length)

Private Attributes
core::Size	entity_length_
core::Real	mutation_rate_
EntityCOP	entity_template_

Member Typedef Documentation

typedef utility::pointer::owning_ptr< EntityRandomizer const > protocols::genetic_algorithm::EntityRandomizer::COP

typedef Entity::COP protocols::genetic_algorithm::EntityRandomizer::EntityCOP

typedef Entity::OP protocols::genetic_algorithm::EntityRandomizer::EntityOP

typedef utility::pointer::owning_ptr< EntityRandomizer > protocols::genetic_algorithm::EntityRandomizer::OP

Constructor & Destructor Documentation

protocols::genetic_algorithm::EntityRandomizer::EntityRandomizer

(

)

protocols::genetic_algorithm::EntityRandomizer::~EntityRandomizer ( )

virtual

Member Function Documentation

void protocols::genetic_algorithm::EntityRandomizer::crossover ( Entity &  entity1, Entity &  entity2  )

virtual

randomly swap [1, N-1] traits between two entities

References numeric::random::random_range(), protocols::genetic_algorithm::Entity::set_traits(), protocols::genetic_algorithm::Entity::traits(), and numeric::random::uniform().

virtual core::Size protocols::genetic_algorithm::EntityRandomizer::entity_length ( ) const

inlinevirtual

References entity_length_.

Referenced by protocols::genetic_algorithm::DiscreteRandomizer::library_size().

EntityCOP protocols::genetic_algorithm::EntityRandomizer::entity_template ( ) const

virtual

References entity_template_.

virtual core::Size protocols::genetic_algorithm::EntityRandomizer::library_size ( ) const

pure virtual

Implemented in protocols::genetic_algorithm::PositionSpecificRandomizer, and protocols::genetic_algorithm::DiscreteRandomizer.

virtual void protocols::genetic_algorithm::EntityRandomizer::mutate ( Entity &  entity )

pure virtual

Implemented in protocols::genetic_algorithm::PositionSpecificRandomizer, protocols::genetic_algorithm::DiscreteRandomizer, and protocols::genetic_algorithm::Mutate1Randomizer.

Referenced by random_entity().

virtual core::Real protocols::genetic_algorithm::EntityRandomizer::mutation_rate ( ) const

inlinevirtual

References mutation_rate_.

Referenced by protocols::genetic_algorithm::Mutate1Randomizer::mutate(), protocols::genetic_algorithm::DiscreteRandomizer::mutate(), and protocols::genetic_algorithm::PositionSpecificRandomizer::mutate().

Entity::OP protocols::genetic_algorithm::EntityRandomizer::random_entity ( )

virtual

References entity_length_, entity_template_, mutate(), mutation_rate_, runtime_assert, and set_mutation_rate().

void protocols::genetic_algorithm::EntityRandomizer::set_entity_length ( core::Size  length )

protectedvirtual

References entity_length_.

Referenced by protocols::genetic_algorithm::PositionSpecificRandomizer::append_choices().

void protocols::genetic_algorithm::EntityRandomizer::set_entity_template ( EntityCOP  entity )

virtual

References entity_template_.

virtual void protocols::genetic_algorithm::EntityRandomizer::set_mutation_rate ( core::Real  rate )

inlinevirtual

References mutation_rate_.

Referenced by random_entity().

Member Data Documentation

core::Size protocols::genetic_algorithm::EntityRandomizer::entity_length_

private

Referenced by entity_length(), random_entity(), and set_entity_length().

EntityCOP protocols::genetic_algorithm::EntityRandomizer::entity_template_

private

Referenced by entity_template(), random_entity(), and set_entity_template().

core::Real protocols::genetic_algorithm::EntityRandomizer::mutation_rate_

private

Referenced by mutation_rate(), random_entity(), and set_mutation_rate().

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The documentation for this class was generated from the following files:

• src/protocols/genetic_algorithm/EntityRandomizer.hh
• src/protocols/genetic_algorithm/EntityRandomizer.cc