protocols::loops::loop_mover Namespace Reference

Namespaces
	perturb
	refine

Classes
class	IndependentLoopMover
class	LoopCM
class	LoopCMCreator
class	LoopMover
	The loop-rebuild protocol. More...

Typedefs
typedef utility::pointer::owning_ptr < IndependentLoopMover >	IndependentLoopMoverOP
typedef utility::pointer::owning_ptr < IndependentLoopMover const >	IndependentLoopMoverCOP
typedef utility::pointer::owning_ptr < LoopCM >	LoopCMOP
typedef utility::pointer::owning_ptr < LoopCM const >	LoopCMCOP
typedef utility::pointer::access_ptr < LoopCM >	LoopCMAP
typedef utility::pointer::access_ptr < LoopCM const >	LoopCMCAP
typedef utility::pointer::owning_ptr < LoopMover >	LoopMoverOP
typedef utility::pointer::owning_ptr < LoopMover const >	LoopMoverCOP
typedef utility::pointer::access_ptr < LoopMover >	LoopMoverAP
typedef utility::pointer::access_ptr < LoopMover const >	LoopMoverCAP
typedef utility::pointer::owning_ptr < MultiLoopMover >	MultiLoopMoverOP
typedef utility::pointer::owning_ptr < MultiLoopMover const >	MultiLoopMoverCOP
typedef utility::pointer::owning_ptr < SingleLoopMover >	SingleLoopMoverOP
typedef utility::pointer::owning_ptr < SingleLoopMover const >	SingleLoopMoverCOP

Enumerations
enum	LoopResult { Success, CriticalFailure, Failure, ExtendFailure }

Functions
std::string const	CCD ("CCD")
std::string const	KIC ("KIC")
std::string const	PERTURB ("perturb")
std::string const	REFINE ("refine")
std::string const	UNSET ("[NOT SET]")
bool	ang_delta (core::Real const &a, core::Real const &b)
void	loops_set_chainbreak_weight (core::scoring::ScoreFunctionOP scorefxn, Size const round)

Variables
static numeric::random::RandomGenerator	RG (47537)
static basic::Tracer	tr ("protocols.loops.loop_mover.LoopCM", basic::t_info)

Typedef Documentation

typedef utility::pointer::owning_ptr< IndependentLoopMover const > protocols::loops::loop_mover::IndependentLoopMoverCOP

typedef utility::pointer::owning_ptr< IndependentLoopMover > protocols::loops::loop_mover::IndependentLoopMoverOP

typedef utility::pointer::access_ptr< LoopCM > protocols::loops::loop_mover::LoopCMAP

typedef utility::pointer::access_ptr< LoopCM const > protocols::loops::loop_mover::LoopCMCAP

typedef utility::pointer::owning_ptr< LoopCM const > protocols::loops::loop_mover::LoopCMCOP

typedef utility::pointer::owning_ptr< LoopCM > protocols::loops::loop_mover::LoopCMOP

typedef utility::pointer::access_ptr< LoopMover > protocols::loops::loop_mover::LoopMoverAP

typedef utility::pointer::access_ptr< LoopMover const > protocols::loops::loop_mover::LoopMoverCAP

typedef utility::pointer::owning_ptr< LoopMover const > protocols::loops::loop_mover::LoopMoverCOP

typedef utility::pointer::owning_ptr< LoopMover > protocols::loops::loop_mover::LoopMoverOP

typedef utility::pointer::owning_ptr< MultiLoopMover const > protocols::loops::loop_mover::MultiLoopMoverCOP

typedef utility::pointer::owning_ptr< MultiLoopMover > protocols::loops::loop_mover::MultiLoopMoverOP

typedef utility::pointer::owning_ptr< SingleLoopMover const > protocols::loops::loop_mover::SingleLoopMoverCOP

typedef utility::pointer::owning_ptr< SingleLoopMover > protocols::loops::loop_mover::SingleLoopMoverOP

Enumeration Type Documentation

enum protocols::loops::loop_mover::LoopResult

Enumerator
Success
CriticalFailure
Failure
ExtendFailure

Function Documentation

bool protocols::loops::loop_mover::ang_delta	(	core::Real const &	a,
		core::Real const &	b
	)

Referenced by protocols::loops::loop_mover::LoopCM::apply().

std::string const protocols::loops::loop_mover::CCD

(

"CCD"

)

Referenced by protocols::loops::loop_mover::LoopCM::build_mover(), and protocols::loops::loop_mover::LoopCM::parse_my_tag().

std::string const protocols::loops::loop_mover::KIC

(

"KIC"

)

Referenced by protocols::loops::loop_mover::LoopCM::build_mover(), protocols::forge::remodel::RemodelMover::confirm_sequence(), protocols::forge::remodel::RemodelMover::design_refine(), and protocols::loops::loop_mover::LoopCM::parse_my_tag().

void protocols::loops::loop_mover::loops_set_chainbreak_weight	(	core::scoring::ScoreFunctionOP	scorefxn,
		Size const	round
	)

References core::scoring::chainbreak, basic::options::OptionKeys::loops::kic_use_linear_chainbreak, core::scoring::linear_chainbreak, and basic::options::option.

Referenced by protocols::loops::loop_mover::refine::LoopMover_Refine_KIC::apply(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC::LoopMover_Perturb_KIC(), protocols::comparative_modeling::LoopRelaxMover::parse_my_tag(), protocols::comparative_modeling::LoopRelaxMover::set_defaults_(), and protocols::loop_modeling::LoopProtocol::start_protocol().

std::string const protocols::loops::loop_mover::PERTURB

(

"perturb"

)

Referenced by protocols::loops::loop_mover::LoopCM::build_mover(), and protocols::loops::loop_mover::LoopCM::parse_my_tag().

std::string const protocols::loops::loop_mover::REFINE

(

"refine"

)

Referenced by protocols::loops::loop_mover::LoopCM::build_mover(), and protocols::loops::loop_mover::LoopCM::parse_my_tag().

std::string const protocols::loops::loop_mover::UNSET

(

""

[NOT SET]

)

Referenced by protocols::loops::loop_mover::LoopCM::build_mover().

Variable Documentation

numeric::random::RandomGenerator protocols::loops::loop_mover::RG(47537)

static

Referenced by protocols::loops::loop_mover::IndependentLoopMover::select_loops().

basic::Tracer protocols::loops::loop_mover::tr("protocols.loops.loop_mover.LoopCM", basic::t_info)

static

Referenced by protocols::loops::loop_mover::LoopCM::apply(), protocols::loops::loop_mover::LoopCM::passport_updated(), and protocols::loops::loop_mover::LoopCM::yield_claims().