Rosetta Protocols  2014.35
protocols::motifs::LigandMotifSearch Member List

This is the complete list of members for protocols::motifs::LigandMotifSearch, including all inherited members.

bp_rotamers(Size const seqpos)protocols::motifs::LigandMotifSearch
bpdata_protocols::motifs::LigandMotifSearchprivate
bpdata_filename_protocols::motifs::LigandMotifSearchprivate
build_positionOPs() const protocols::motifs::LigandMotifSearchinline
build_positionOPs_protocols::motifs::LigandMotifSearchprivate
BuildPosition_from_Size(Pose const &pose, Size const input_BP)protocols::motifs::LigandMotifSearch
clear_bprots_protocols::motifs::LigandMotifSearchprivate
data_protocols::motifs::LigandMotifSearchprivate
data_filename_protocols::motifs::LigandMotifSearchprivate
defs2BuildPositions(Pose const &pose, protocols::dna::DnaDesignDefOPs const &defs)protocols::motifs::LigandMotifSearch
defs2BuildPositions_findts(Pose const &pose, protocols::dna::DnaDesignDefOPs const &defs)protocols::motifs::LigandMotifSearch
dna_positions() const protocols::motifs::LigandMotifSearchinline
dna_positions_protocols::motifs::LigandMotifSearchprivate
DnaDesignDefOP typedefprotocols::motifs::LigandMotifSearch
DnaDesignDefOPs typedefprotocols::motifs::LigandMotifSearch
dtest_cutoff() const protocols::motifs::LigandMotifSearchinline
dtest_cutoff_protocols::motifs::LigandMotifSearchprivate
dump_motifs_protocols::motifs::LigandMotifSearchprivate
get_rotamers()protocols::motifs::LigandMotifSearch
get_sphere_aa(Pose const &pose, core::Real cut1)protocols::motifs::LigandMotifSearch
identify_motif_build_positions(Pose const &pose, Sizes &build_positions)protocols::motifs::LigandMotifSearch
identify_motif_BuildPositions(Pose const &pose)protocols::motifs::LigandMotifSearch
incorporate_motifs(Pose const &pose)protocols::motifs::LigandMotifSearch
init_options()protocols::motifs::LigandMotifSearchprivate
initialize(Pose const &pose)protocols::motifs::LigandMotifSearch
initialize(Pose const &pose, utility::vector1< Size > &input_BPs)protocols::motifs::LigandMotifSearch
LigandMotifSearch()protocols::motifs::LigandMotifSearch
LigandMotifSearch(LigandMotifSearch const &src)protocols::motifs::LigandMotifSearch
map2keyvector(std::map< Size, std::set< std::string > > mappositions)protocols::motifs::LigandMotifSearch
minimize() const protocols::motifs::LigandMotifSearchinline
minimize_protocols::motifs::LigandMotifSearchprivate
motif_library() const protocols::motifs::LigandMotifSearchinline
motif_library_protocols::motifs::LigandMotifSearchprivate
operator=(LigandMotifSearch const &src)protocols::motifs::LigandMotifSearch
output_protocols::motifs::LigandMotifSearchprivate
output_filename_protocols::motifs::LigandMotifSearchprivate
override_option_input(Real const &r1, Real const &z1, Real const &r2, Real const &z2, Real const &d1, Size const &rlevel)protocols::motifs::LigandMotifSearch
PackerTask typedefprotocols::motifs::LigandMotifSearch
Pose typedefprotocols::motifs::LigandMotifSearch
position_vector_setup(Pose const &pose)protocols::motifs::LigandMotifSearch
protein_dna_motif()protocols::motifs::LigandMotifSearch
protein_DNA_motif_build_positions_JA(Pose const &pose, Sizes &build_positions, Sizes &target_positions)protocols::motifs::LigandMotifSearch
protein_DNA_motif_target_positions_JA(Pose const &pose, Sizes &build_positions, Sizes &target_positions, Sizes &short_tl)protocols::motifs::LigandMotifSearch
protein_positions() const protocols::motifs::LigandMotifSearchinline
protein_positions_protocols::motifs::LigandMotifSearchprivate
quick_and_dirty_protocols::motifs::LigandMotifSearchprivate
Real typedefprotocols::motifs::LigandMotifSearch
reset_option_input()protocols::motifs::LigandMotifSearch
rmsd_cutoff_1() const protocols::motifs::LigandMotifSearchinline
rmsd_cutoff_1_protocols::motifs::LigandMotifSearchprivate
rmsd_cutoff_2() const protocols::motifs::LigandMotifSearchinline
rmsd_cutoff_2_protocols::motifs::LigandMotifSearchprivate
rot_level() const protocols::motifs::LigandMotifSearchinline
rot_level_protocols::motifs::LigandMotifSearchprivate
rots2add_protocols::motifs::LigandMotifSearchprivate
run(Pose const &pose, utility::vector1< Size > &input_BPs)protocols::motifs::LigandMotifSearch
run(Pose const &pose, PackerTask &task)protocols::motifs::LigandMotifSearch
run(Pose const &pose, core::Real &ligand_motif_sphere)protocols::motifs::LigandMotifSearch
set_motif_library(MotifLibrary &motiflibrary)protocols::motifs::LigandMotifSearch
shorten_target_list(Pose const &pose, Size const bp, Sizes &full_tl)protocols::motifs::LigandMotifSearch
Size typedefprotocols::motifs::LigandMotifSearch
Sizes typedefprotocols::motifs::LigandMotifSearch
target_conformers_map() const protocols::motifs::LigandMotifSearchinline
target_conformers_map_protocols::motifs::LigandMotifSearchprivate
target_positions() const protocols::motifs::LigandMotifSearchinline
target_positions_protocols::motifs::LigandMotifSearchprivate
ztest_cutoff_1() const protocols::motifs::LigandMotifSearchinline
ztest_cutoff_1_protocols::motifs::LigandMotifSearchprivate
ztest_cutoff_2() const protocols::motifs::LigandMotifSearchinline
ztest_cutoff_2_protocols::motifs::LigandMotifSearchprivate
~LigandMotifSearch()protocols::motifs::LigandMotifSearchvirtual